Quercus lobata (valley oak): 115963292
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Entry
115963292 CDS
T07350
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
qlo03009
]
115963292
Ribosome biogenesis [BR:
qlo03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
115963292
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_C
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_Vps41
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_IP5PC_F
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_HPS5
VPS8_N
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
115963292
NCBI-ProteinID:
XP_030938109
LinkDB
All DBs
Position
10:4135457..4139795
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AA seq
470 aa
AA seq
DB search
MDKDKEALVVCSDKSMGIGITIWDMDTGDHLLHIPTCASPSHGLVCLRKQFLVASQIHKH
GSVGGGAIFTWALNKPQSPLRSYPVEAIGSLSSTKDGLYLAGGALSGNAYLWEIANGRLL
KTWHAHHKSLNCLLFSNDDSLLISGSDDGMICVWSVISLLDTEDSGSLHSLLHYSSEHKS
CITGLLTTSGSSISVLVSSSLDGTCKVWDFVSGRLIQTQVYPLAITAIALHPEEQFLFCG
NVDGRIFVNKLDVGLLEEQFLVAEAQPVVLNGHNGAITALTFSESGLISASEDCTICMWD
VVNQVIIRRFNHGKGAVTNMTVIPQSSLLSISKNHRVSNQFHVSLLEKFPQPANSFKGTL
NLFSLGHSSEEKQTSLDFQSTDSLQQHISDLEKKRTPAAVQVKVETCIENRMWATRMTKH
VMEMNKHLQSRLLDLMECRLFWSTQIDSPTSKKRKMLKAESSILEGEEEP
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggataaggataaggaggctttggtggtttgcagtgacaagagcatgggaataggcata
acaatatgggatatggacactggggatcatcttcttcacataccaacttgtgcttcacct
tctcatgggcttgtgtgcttgagaaagcagttccttgtagcttctcagattcacaaacat
gggtctgttggtggaggagctatcttcacatgggcattgaataagcctcagtcacctctt
cggagttacccagtggaggccattgggtcactttctagcacaaaagatggcctatatctt
gcaggtggggcgctttctggaaatgcttatctttgggagattgccaatggaagattgctc
aagacttggcatgctcatcacaaatctttaaattgcttgctgttttccaatgatgattct
cttctcatttccgggtcagatgatggtatgatctgtgtttggtctgtaattagtttgcta
gacacggaggattctggaagcttgcattctttgttacactattcatcagagcataaatct
tgtattactggcctattgaccacatcaggaagctcaatttcagttttagtatcaagctcc
ctcgatggcacttgcaaggtttgggattttgtctcaggaaggcttatacaaactcaagtg
tatccactagcaataactgcaattgctcttcacccagaagagcaattcttattctgtgga
aatgtagatggaagaatttttgtcaacaagcttgatgttggactgttggaggaacaattc
cttgttgcagaagcccaaccagttgtgctaaatggacacaatggagccataactgcattg
accttcagtgaatcgggtctgatatctgcatctgaggactgcaccatttgcatgtgggat
gtagtcaaccaggtgattatccgaagattcaatcatggaaaaggggcagtaactaatatg
acagtgattccacagtcctcactgctttctatatcaaaaaatcatagagtttcaaaccag
ttccatgtttcattacttgaaaagtttcctcagccagccaactcattcaagggaacactc
aatctcttttccttaggtcattcctctgaagaaaagcagacttcccttgacttccaaagc
actgattcattgcagcagcatatatctgatttggagaaaaaacgaacaccagcagccgtg
caagtgaaggtggaaacttgtatagagaatcggatgtgggccacaagaatgacaaagcat
gtcatggagatgaataagcatttgcaatcacgtttgcttgacttgatggagtgcagattg
ttttggtctactcaaattgactcacccacatctaaaaagagaaagatgctcaaggctgag
agttcaattctggagggggaggaggaaccatag
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