Quercus lobata (valley oak): 115963458
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Entry
115963458 CDS
T07350
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
115963458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115963458
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
115963458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
115963458
NCBI-ProteinID:
XP_030938317
UniProt:
A0A7N2MR09
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Position
10:complement(22706704..22720286)
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AA seq
942 aa
AA seq
DB search
MEGNFEEQSKLPELKLDAKQAQGFLSFFKKLPNDPRAVRFFDRRDYYTAHGENATFIAKT
YYHTTTALRQLGSGSDSLSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSG
TPGNLGSFEDVLFANNEMQDSPVVVALSPYFRENGCTIGLSYIDLTKRVLGLAEFLDDSH
FTNTESTLVALGCKECLLPIESGKSKESRNLHDALTRCGVMLTERKKTEFKTRDLVEDLG
RLVKGSKEPVRDLVSAFEFAPGALGALLSYAELLADESNYGNYTICRYNLDSYMRLDSTA
MRALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVKEINSRLDLVQAF
VEDTALRQDLRQHLKRISDIERLMHNLEKKRVGLQHIVKLYQSSIRLPYIKSALENYDGQ
FSSLIKDRYLDPLEFWTDDDHLNKFIGLVETSVDLDQLENGEYMISSSYDPALSALKDEQ
ESLERQIHNLHKQTANDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLE
TRKDGVKFTNTKLKKLGDQYQKILEEYKNCQKELVNRVVQTAATFCEVFGSLAGLLSELD
VLLSFADLASSCPTPYTRPDITPADEGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATH
FHELTALARETPNHEPHEKQTVGVANYHVSAHIDSASRKLTMLYKVEPGACDQSFGIHVA
EFANFPESVVTLAREKAAELEDFSPTATITNDAQKEVGSKRKRECDQDDMSRGAARAHQF
LKEFSDLPLDKMDLKQALQQVNNLKDELQKDAVNCSWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggaagggaattttgaggagcagagcaagcttcctgagctcaaactcgatgctaagcaa
gctcaagggttcctctcattcttcaagaagctacccaatgacccaagggctgtacggttc
tttgatcgcagggactattatactgctcatggtgaaaatgcaacttttattgcaaagacc
tactatcacactactactgctttacgacaattgggcagcggatccgattccctttcaagt
gtaagtgttagcaaaaacatgttcgaaacaatagcccgtgatcttctcctggagagaaca
gaccacactcttgagctctatgagggcagtggttcaaactggagactggtgaaaagtgga
actcctggaaatcttggtagttttgaagatgttttgtttgccaacaatgagatgcaggat
tcccctgttgttgtcgcactatcaccctacttccgtgaaaatgggtgcactatagggtta
agttacattgatttaacaaagagagtacttgggttggctgaatttcttgatgatagccac
tttacaaatacggagtcaactttggttgctcttggttgtaaggaatgccttctgcctatt
gagagtggcaaatccaaggaaagtaggaacttacatgatgctttgactagatgtggagtg
atgttaactgagaggaagaaaactgagttcaaaacaagggacttagttgaggatcttggt
aggcttgtcaaaggctctaaagaacctgttcgtgacttagtttctgcctttgaatttgca
cctggtgctttgggggcattactgtcttatgctgaattactagcagatgagagcaattat
ggaaattatactatctgtaggtacaatcttgacagttacatgaggctagattctactgca
atgagggcactgaatgtcatggaaagcaaaacagatgcaaacaaaaatttcagtttgttt
ggtctcatgaatagaacttgtactgctggaatgggaaaacgattattgcacatgtggcta
aagcagcctttactggatgtaaaggaaattaactccaggctggatttggtacaagcattt
gtggaggatactgctcttcgccaagatctgaggcagcacctgaaaagaatatcagatatt
gagcgactgatgcacaatcttgagaagaaaagagttggtttgcagcatattgtaaaactt
taccagtcaagtataagacttccctacattaaaagtgccctggaaaattatgatggacaa
ttttcctcactgatcaaggacaggtatttggatccgcttgagttctggactgatgatgat
cacctgaataagttcattggtcttgtagaaacttctgtcgaccttgatcaacttgagaat
ggggaatacatgatttcttctagttatgatcctgcactgtctgcactgaaagatgaacaa
gagtcattggagcgccaaatacataatttgcataaacaaactgctaatgatcttgatctg
cccgtagataaggccttaaagttagataagggcacgcagtttggacatgtttttagaatt
acaaagaaggaggagccaaaaataaggaaaaagctcaccactcaatttattgtccttgaa
actcgaaaggatggagttaagtttaccaatacaaagcttaaaaaattaggtgaccaatat
caaaagatacttgaggagtataagaactgtcaaaaagagctggttaaccgagtagttcaa
actgcagcaacattctgtgaggtgtttgggtctttagctgggttgctttctgagttggat
gtcttacttagttttgctgatttggcttctagttgtcccactccctacacaagaccagac
atcactccagcggatgagggagatattatattagaagggagtagacacccttgtgtggag
gctcaagactgggttaattttatcccaaatgattgtaaacttgtcagggggaaaagttgg
ttccagatcattaccgggcctaacatgggtggaaaatccacatttattcgacaggtcggt
gtgaatattctgatggcacaagttggttcttttgttccatgtgacaaagctagcatttct
gtacgtgactgcatttttgctcgtgtgggtgctggtgactgccaattacgtggagtttct
acctttatgcaagaaatgcttgaaacggcatccatattgaagggagctacagataagtca
ctgataattattgatgagttggggcgcgggacatcaacttatgacggatttggtctagct
tgggccatctgtgagcaccttgttgaggtgatcaaagcacctacattgtttgcaacccac
tttcatgaactgactgcattagctcgtgaaactcctaatcatgagccccatgagaagcaa
actgttggtgtggcaaactatcatgttagcgcacacattgactcagcaagtcgcaagttg
actatgctgtataaggtcgagccaggggcttgtgatcaaagttttggtattcatgtagca
gaatttgcaaactttcctgaaagcgtggttacccttgctagagaaaaggctgctgaattg
gaagatttctcacctactgcaaccattacgaatgatgcccaaaaagaggtaggatccaag
cgaaagagagagtgtgatcaggatgacatgtctagaggtgctgcccgggctcaccagttt
ctgaaggagttttctgatttgccgttagataaaatggatttgaaacaggctctgcagcaa
gtaaacaacttgaaggatgagttacagaaggatgcagtaaactgtagctggctccagcaa
ttcttctag
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