Quercus lobata (valley oak): 115963581
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Entry
115963581 CDS
T07350
Name
(RefSeq) autophagy-related protein 16 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
115963581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
qlo04131
]
115963581
03029 Mitochondrial biogenesis [BR:
qlo03029
]
115963581
Membrane trafficking [BR:
qlo04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
115963581
Others
Specific organelles associated proteins
Auto phagosome
115963581
Mitochondrial biogenesis [BR:
qlo03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
115963581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
ATG16
Beta-prop_TEP1_C
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_NWD2_C
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
WDR54
NBCH_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_VPS8
Beta-prop_EIPR1
Beta-prop_RIG_1st
Cytochrom_D1
Beta-prop_Nup120_160
eIF2A
DUF7165
Fez1
INO80E
DUF948
Motif
Other DBs
NCBI-GeneID:
115963581
NCBI-ProteinID:
XP_030938499
UniProt:
A0A7N2MMZ2
LinkDB
All DBs
Position
10:5867437..5871755
Genome browser
AA seq
518 aa
AA seq
DB search
MMMEMNFFHRSQEVIAREAIKHALKALRKRHLLEEGAHAPAFIAISRPIASQGSEWKEKA
ENLELELQQCYKAQSRLSEQLVVEVAESRASKASLQEKEEGITNLQTELTQTRDECSQLQ
ADLEEKIKALELLVSENHQLKAELEEMTNKAKNAEAENKMLVDRWMLQKMKDAERLNEAN
AIYEEMVDRLKASGLEKLAQQQVDGVVRRNEDGAEFFMESTIPSICKHRINAHEGGCASI
LFEYNSGKLVSGGQDRTIKMWDTNTGSLSHTLYGCLGSVLDLTITHDNRSVIAASSSNNL
YVWDVNSGRVRHTLTGHTDKVCAVDVSKVSSRHVLSAAYDRTIKVWDLNKGYCINTIICH
SNCNALSFSMDGLTICSGHVDGNLRLWDIQTGKLLSEVAAHSLAVTSISLSRNGNVVLTS
GRDNLHNLFDMRSLEVCGTLRASGNRVASNWSRSCISPDDNYVAAGSADGSISIWSISKA
DIVSTLREHTSPVLCCSWSGLGKPLASADRNGIICTWT
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgatgatggagatgaatttttttcacaggtcacaggaggtgatagcgagggaagcgata
aagcacgcattgaaggctctgcggaagcggcatttgcttgaagaaggtgctcatgctccg
gctttcatcgcgatttctaggccgatcgcttctcagggttcagaatggaaagagaaagca
gaaaatttggagttggaacttcagcaatgttacaaagctcaatctcgattgtctgagcaa
cttgtggtggaggttgctgagtccagagcttcaaaagcatcgcttcaagagaaagaagaa
ggaatcactaatctgcagacagagttgacccaaacaagggatgaatgctctcaattacag
gcagacctagaagaaaaaattaaagctttagaattgcttgtgagtgagaaccatcaactt
aaagcagaactggaagagatgactaataaagctaagaatgctgaggctgaaaataagatg
ttagttgatcgctggatgctgcagaagatgaaggatgcagaacgactcaatgaggcaaat
gcaatttatgaagaaatggttgatcggctcaaagctagtggtttagaaaaacttgctcaa
caacaagtagatggtgtggtccgtcgaaatgaagatggtgctgaattttttatggagtca
accattccctctatatgcaagcacaggatcaatgcccatgaaggtggctgtgcttccata
ttgtttgagtacaattctggcaagttggtcagtggagggcaggacaggacaatcaagatg
tgggatacaaacacaggatcactaagccatactctctatggttgccttggctctgttctt
gatcttaccattacccatgacaatagatctgtcatagcagcaagcagttcgaacaacttg
tatgtatgggatgtcaactcaggtcgggtccgccatactctcactggccatactgataaa
gtttgtgctgtagatgtaagcaaagtttcgagtcgtcatgttttgagtgcagcttatgat
cgtaccataaaagtttgggacttgaataaaggttactgcattaacacaatcatttgtcac
agcaattgcaatgctcttagcttcagcatggatggactaaccatttgttctggtcacgtt
gatgggaatcttcgattatgggatattcagacaggaaagctacttagtgaagttgctgca
cattcacttgctgtaacatctatatctctgtctcggaacggaaatgtagtattgactagt
ggaagggacaacttgcataatttgtttgatatgcgatctctggaagtgtgtggcacgctt
agagcgtctggaaatagagtggcgtctaattggagccggtcctgtatcagtccagatgac
aactatgttgctgctggatccgctgatggttctatctccatttggtctatatctaaagct
gatatagtgagcactctgagggaacacacttctccggtgctgtgttgttcttggagtggg
cttgggaaacctttagcctcggcagacaggaatggaattatatgtacctggacatga
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integrated database retrieval system
