KEGG   Quercus lobata (valley oak): 115963839
Entry
115963839         CDS       T07350                                 
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03440  Homologous recombination
qlo03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    115963839
   03460 Fanconi anemia pathway
    115963839
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:qlo03032]
    115963839
   03400 DNA repair and recombination proteins [BR:qlo03400]
    115963839
Enzymes [BR:qlo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     115963839
DNA replication proteins [BR:qlo03032]
 Eukaryotic type
  DNA Topoisomerases
   115963839
DNA repair and recombination proteins [BR:qlo03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     115963839
   FA (Fanconi anemia) pathway
     115963839
SSDB
Motif
Pfam: Topoisom_bac Toprim Zn_ribbon_GRF Zn_ribbon_Top1 Zn_ribbon_GRF_2 zf-CCHC zf-C2H2_10
Other DBs
NCBI-GeneID: 115963839
NCBI-ProteinID: XP_030938891
LinkDB
Position
10:41312393..41348276
AA seq 926 aa
MSGGGRGGGGMKVLHVAEKPSVAKSVATILSRNSGGLRTREGRSRYNKIFEFSYSINGRP
CHMLVTSVTGHLMELEFQDRYRKWHSCDPADLFHAPVHKFVPEDKLDIKRTLEEEARWCQ
WLVLWLDCDREGENIAFEVIEVCTAVNPHLTIKRAHFSALIDREIHEAVQRLVEPNKCFA
DAVDARQEIDLRIGASFTRFQTMLLRDAFVIDFTTDDRNLVLSYGPCQFPTLGFVVERYW
EIQAHEPEEFWTINCSHKSDEGIATFNWMRGHLFDYTCAVIIYEMCVQEPIATVTKVRQQ
EKLKYPPYPLNTIELEKRASRFFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSQRTDLH
AIVQEQQRHPVWGPYAQQLLEPGSGLWRNPGNGGHDDKAHPPIHPTKFSSGESGWSQDHH
RLYELVVRHFLACVSQPAVGAETNVEIDIAGELFSASGRAILAKNYLDVYRFESWGSSTI
PTYVSGQQFVPTSLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYA
TKDSNMRFSPTNLGEALVMGYDDMGYKLWKPYLRAVMERDMKAVSEGTKSKAEVLTTSLQ
QMKACFVDARLNKVKLFEAMAVFFERSNRSGGDEQHAAGEVVRPCGLCQESDMVLRRNRD
GNFMVGCMGYPQCRNAVWLPGSLSEAVVTTNICNTCTPGPVYMIQFKFRPLEIPPNYNAN
HLGCIGGCDEILRQLIEICGTGSRMPARGRGSSAPASNVQQSNSRHGEARRSACIYCHQT
GHSSSDCPSQVSGSRSAQRRGMNPQSGELSVPCSTCGTPCILRTANTANNRGRKFYSCQS
QECNFFVWEDNLNNVTGGNVQRGRTSVSASNTSRSGGRGRGGRGGSRAATATATFVSATG
DPVTGRRCFVCGDPSHFANVCPNRGS
NT seq 2781 nt   +upstreamnt  +downstreamnt
atgtccggcggcgggcgcggcggcggcggcatgaaggtgctgcacgtggcggagaagccg
tcggtggcgaagtctgtggccaccattctgtctcggaacagtgggggcctgagaaccagg
gagggtcggtcgcgatacaacaagatattcgagttcagttactccatcaatggtcgcccc
tgccacatgctcgtcacttccgtcactggtcacctcatggagctcgaattccaagaccga
tatcgcaaatggcactcctgtgaccccgccgatctcttccacgctcccgtccacaaattc
gtccccgaggacaagttggatatcaagaggacattggaagaggaagctagatggtgccag
tggcttgtattgtggctagattgtgatagagaaggagaaaatattgcatttgaagtgata
gaagtttgcacggcagtaaatcctcatcttaccatcaagagggctcacttttctgcttta
attgacagggaaatccatgaagcagtgcaacgtcttgttgagccgaataaatgttttgct
gatgcagtggatgctaggcaagaaatagatcttcggattggtgcttctttcactaggttt
cagactatgctgttgagagatgcatttgttattgattttactacagatgacagaaatctt
gttctaagttatggtccttgtcagttccctacacttggcttcgttgtggaaagatattgg
gaaatacaagcacacgagccagaagaattttggaccatcaactgttctcacaaatcggat
gaaggcattgctaccttcaattggatgcgcggtcatctgtttgattacacatgtgctgtt
ataatttatgagatgtgtgttcaggagccaattgcaactgttacaaaggttagacaacag
gagaaattgaagtatcctccttatcctttaaataccattgagcttgaaaaacgtgcttcg
cgattctttcggatgagttctgaacacactatgaaggttgcagaagatttatatcaagca
ggtttcatcagctatcctcgtacagagactgatagcttttctcagagaactgatctgcat
gcaattgtgcaagaacagcaaaggcatcctgtatggggaccatatgcacagcagttgttg
gaacctgggtcaggactttggagaaaccctggtaatggtggacatgatgacaaggcccat
ccacccattcatccaacaaaattttcttctggagaatctggatggagtcaagatcaccat
agattgtatgagctggttgttcgccatttcctggcatgtgtctcccagccagcagtaggg
gctgaaactaatgttgaaatcgacattgctggtgaattattttctgcatcagggagagcg
atactagctaaaaactacttagatgtttaccgctttgagtcttggggaagttcaacgatc
ccaacatatgtctctggacaacagtttgtaccgacatcattgaccctagattcaggagtt
actagaccgccaccacttctgagtgaagctgatctgcttagttgtatggacaaggagggc
attggtacggatgcgacgatgcatgatcacataaaaaagctgcttgatcggttttatgca
actaaggactcgaacatgcgtttctctccaactaatcttggtgaggcacttgttatggga
tatgatgacatggggtataagctttggaaaccatatcttagagcagttatggagcgtgac
atgaaagcagttagcgaaggcactaagagcaaagctgaagttttgacaactagtttgcag
cagatgaaagcttgctttgtagatgccaggttaaataaagtaaaactttttgaagccatg
gcagttttctttgagaggtccaaccgatctggtggggatgagcagcatgcagccggagaa
gttgtcaggccatgtggactttgccaggaatcagatatggtgcttcggcgaaaccgggat
ggcaatttcatggttggatgcatgggttatccacagtgcaggaatgctgtttggctcccc
ggatctctatcagaagcagtggtaaccactaatatttgcaacacttgcactccaggtcct
gtatacatgattcaatttaagttccgcccgctggaaataccaccaaactacaatgccaac
catttgggttgcattggtggctgtgacgagattcttagacagctgatagaaatctgtgga
actggttctcgcatgccagcaagaggacgaggatcctctgcacccgccagcaatgtccaa
caaagtaactctaggcacggtgaggctaggcgcagtgcttgcatatactgccaccaaaca
gggcattcttcaagtgattgcccatcacaggtttcaggttctcgaagtgctcaacgtcgt
ggaatgaaccctcaaagtggagaactgtcagttccatgtagcacatgtggaacaccgtgc
attctgcgaactgctaatacggcaaataacaggggaagaaagttctactcgtgtcagtca
caagagtgcaacttttttgtatgggaggataacctcaacaatgtcactggagggaatgtt
caacgtggaagaacaagtgtctcagcatctaataccagcaggagtggtggccgcggtaga
ggtggtcggggtggatcacgtgctgctactgcaactgcaacttttgtatcagccactggt
gatcctgtaactggcagaagatgttttgtttgcggtgatccatcacattttgcaaatgtg
tgcccaaatcgtggttcttga

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