Quercus lobata (valley oak): 115963839
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Entry
115963839 CDS
T07350
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03440
Homologous recombination
qlo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115963839
03460 Fanconi anemia pathway
115963839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
qlo03032
]
115963839
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115963839
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
115963839
DNA replication proteins [BR:
qlo03032
]
Eukaryotic type
DNA Topoisomerases
115963839
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
115963839
FA (Fanconi anemia) pathway
115963839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-CCHC
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
115963839
NCBI-ProteinID:
XP_030938891
LinkDB
All DBs
Position
10:41312393..41348276
Genome browser
AA seq
926 aa
AA seq
DB search
MSGGGRGGGGMKVLHVAEKPSVAKSVATILSRNSGGLRTREGRSRYNKIFEFSYSINGRP
CHMLVTSVTGHLMELEFQDRYRKWHSCDPADLFHAPVHKFVPEDKLDIKRTLEEEARWCQ
WLVLWLDCDREGENIAFEVIEVCTAVNPHLTIKRAHFSALIDREIHEAVQRLVEPNKCFA
DAVDARQEIDLRIGASFTRFQTMLLRDAFVIDFTTDDRNLVLSYGPCQFPTLGFVVERYW
EIQAHEPEEFWTINCSHKSDEGIATFNWMRGHLFDYTCAVIIYEMCVQEPIATVTKVRQQ
EKLKYPPYPLNTIELEKRASRFFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSQRTDLH
AIVQEQQRHPVWGPYAQQLLEPGSGLWRNPGNGGHDDKAHPPIHPTKFSSGESGWSQDHH
RLYELVVRHFLACVSQPAVGAETNVEIDIAGELFSASGRAILAKNYLDVYRFESWGSSTI
PTYVSGQQFVPTSLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYA
TKDSNMRFSPTNLGEALVMGYDDMGYKLWKPYLRAVMERDMKAVSEGTKSKAEVLTTSLQ
QMKACFVDARLNKVKLFEAMAVFFERSNRSGGDEQHAAGEVVRPCGLCQESDMVLRRNRD
GNFMVGCMGYPQCRNAVWLPGSLSEAVVTTNICNTCTPGPVYMIQFKFRPLEIPPNYNAN
HLGCIGGCDEILRQLIEICGTGSRMPARGRGSSAPASNVQQSNSRHGEARRSACIYCHQT
GHSSSDCPSQVSGSRSAQRRGMNPQSGELSVPCSTCGTPCILRTANTANNRGRKFYSCQS
QECNFFVWEDNLNNVTGGNVQRGRTSVSASNTSRSGGRGRGGRGGSRAATATATFVSATG
DPVTGRRCFVCGDPSHFANVCPNRGS
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcggcgggcgcggcggcggcggcatgaaggtgctgcacgtggcggagaagccg
tcggtggcgaagtctgtggccaccattctgtctcggaacagtgggggcctgagaaccagg
gagggtcggtcgcgatacaacaagatattcgagttcagttactccatcaatggtcgcccc
tgccacatgctcgtcacttccgtcactggtcacctcatggagctcgaattccaagaccga
tatcgcaaatggcactcctgtgaccccgccgatctcttccacgctcccgtccacaaattc
gtccccgaggacaagttggatatcaagaggacattggaagaggaagctagatggtgccag
tggcttgtattgtggctagattgtgatagagaaggagaaaatattgcatttgaagtgata
gaagtttgcacggcagtaaatcctcatcttaccatcaagagggctcacttttctgcttta
attgacagggaaatccatgaagcagtgcaacgtcttgttgagccgaataaatgttttgct
gatgcagtggatgctaggcaagaaatagatcttcggattggtgcttctttcactaggttt
cagactatgctgttgagagatgcatttgttattgattttactacagatgacagaaatctt
gttctaagttatggtccttgtcagttccctacacttggcttcgttgtggaaagatattgg
gaaatacaagcacacgagccagaagaattttggaccatcaactgttctcacaaatcggat
gaaggcattgctaccttcaattggatgcgcggtcatctgtttgattacacatgtgctgtt
ataatttatgagatgtgtgttcaggagccaattgcaactgttacaaaggttagacaacag
gagaaattgaagtatcctccttatcctttaaataccattgagcttgaaaaacgtgcttcg
cgattctttcggatgagttctgaacacactatgaaggttgcagaagatttatatcaagca
ggtttcatcagctatcctcgtacagagactgatagcttttctcagagaactgatctgcat
gcaattgtgcaagaacagcaaaggcatcctgtatggggaccatatgcacagcagttgttg
gaacctgggtcaggactttggagaaaccctggtaatggtggacatgatgacaaggcccat
ccacccattcatccaacaaaattttcttctggagaatctggatggagtcaagatcaccat
agattgtatgagctggttgttcgccatttcctggcatgtgtctcccagccagcagtaggg
gctgaaactaatgttgaaatcgacattgctggtgaattattttctgcatcagggagagcg
atactagctaaaaactacttagatgtttaccgctttgagtcttggggaagttcaacgatc
ccaacatatgtctctggacaacagtttgtaccgacatcattgaccctagattcaggagtt
actagaccgccaccacttctgagtgaagctgatctgcttagttgtatggacaaggagggc
attggtacggatgcgacgatgcatgatcacataaaaaagctgcttgatcggttttatgca
actaaggactcgaacatgcgtttctctccaactaatcttggtgaggcacttgttatggga
tatgatgacatggggtataagctttggaaaccatatcttagagcagttatggagcgtgac
atgaaagcagttagcgaaggcactaagagcaaagctgaagttttgacaactagtttgcag
cagatgaaagcttgctttgtagatgccaggttaaataaagtaaaactttttgaagccatg
gcagttttctttgagaggtccaaccgatctggtggggatgagcagcatgcagccggagaa
gttgtcaggccatgtggactttgccaggaatcagatatggtgcttcggcgaaaccgggat
ggcaatttcatggttggatgcatgggttatccacagtgcaggaatgctgtttggctcccc
ggatctctatcagaagcagtggtaaccactaatatttgcaacacttgcactccaggtcct
gtatacatgattcaatttaagttccgcccgctggaaataccaccaaactacaatgccaac
catttgggttgcattggtggctgtgacgagattcttagacagctgatagaaatctgtgga
actggttctcgcatgccagcaagaggacgaggatcctctgcacccgccagcaatgtccaa
caaagtaactctaggcacggtgaggctaggcgcagtgcttgcatatactgccaccaaaca
gggcattcttcaagtgattgcccatcacaggtttcaggttctcgaagtgctcaacgtcgt
ggaatgaaccctcaaagtggagaactgtcagttccatgtagcacatgtggaacaccgtgc
attctgcgaactgctaatacggcaaataacaggggaagaaagttctactcgtgtcagtca
caagagtgcaacttttttgtatgggaggataacctcaacaatgtcactggagggaatgtt
caacgtggaagaacaagtgtctcagcatctaataccagcaggagtggtggccgcggtaga
ggtggtcggggtggatcacgtgctgctactgcaactgcaacttttgtatcagccactggt
gatcctgtaactggcagaagatgttttgtttgcggtgatccatcacattttgcaaatgtg
tgcccaaatcgtggttcttga
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