Quercus lobata (valley oak): 115964042
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Entry
115964042 CDS
T07350
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
qlo03009
]
115964042
Ribosome biogenesis [BR:
qlo03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
115964042
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
EIF3I
Beta-prop_WDR75_1st
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
WDR90_beta-prop_4th
Beta-prop_IP5PC_F
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_HPS5
VPS8_N
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
115964042
NCBI-ProteinID:
XP_030939188
UniProt:
A0A7N2MNP7
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Position
10:4196783..4201085
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AA seq
470 aa
AA seq
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MDKDKEALVVCSDKSMGIGITIWDMDTGDHLLHIPTCASPSHGLVCLRKQFLVASQIHKQ
GSVGGGAIFTWALNKPQSPLRSYPVEAIGSLSSTKDGLYLAGGALSGNAYLWEIANGRLL
KTWHAHHKSLNCLLFSNDDSLLISGSDDGMICVWSVISLLDTEDSGSFHSLLHYSSEHKS
CITGLLTTSGSSISVLVSSSLDGTCKVWDFVSGRLIQTQVYSLAITAIALHPEEQFLFCG
SVDGRIFVNKLDVGLLEEQFVVAEAQPVVLNGHNGAITALTFSESGLMSASEDCTICMWD
VVNQVIIRRFNHGKGAVTNMTVIPQSSLLSISKNQRVSNRFHVSLLEKFPQPANSFKGTL
NLLSLGHSSEEKQTSLDFQSTDSLQQHISDLEKKRTPAAVQVKVETCIENRMWATRMTKH
VMEMNKHLQSRLLDLMEYRLFWSTQIDSPTSKKRKMLKVESSILEGEEEP
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggataaggataaggaggctttggtggtttgcagtgacaagagcatgggaataggcata
acaatatgggatatggacactggggatcatcttctacacataccaacttgtgcttcacct
tctcatgggcttgtgtgcttgagaaagcagttccttgtagcttctcagattcacaaacag
gggtctgttggtggaggagctatcttcacatgggcattgaataagcctcagtcacccctt
cggagttacccagtggaggccattgggtcactttctagcacaaaggatggcctatatctt
gcaggtggggcgctttctggaaatgcttatctttgggagattgccaatggaagattgctc
aagacttggcatgctcatcacaaatctttaaattgcttgctgttttccaatgatgattct
cttctcatttccgggtcagatgatggtatgatctgtgtttggtctgtaattagcttgcta
gacacggaggattctggaagctttcattctttgttacactattcatcagagcataaatct
tgtattactggtctattgaccacatcaggaagctcaatttcagttttagtatcaagctcc
cttgatggcacatgcaaggtttgggattttgtctcaggaaggcttatacaaactcaagtg
tattcactagcaataactgcaattgctcttcacccagaagagcaattcttgttctgtgga
agtgtagatggaagaatttttgtcaacaagcttgatgttggactgttggaggaacaattc
gttgttgcagaagcccaaccagttgtgctaaatggacacaatggagccataactgcattg
accttcagtgaatcgggtctgatgtctgcatctgaggactgcaccatttgcatgtgggat
gtagtcaaccaggtgattatccgaagattcaatcatggaaaaggggcagtaactaatatg
acagtgattccgcagtcctcactgctttctatatcaaaaaatcagagagtttcaaaccgg
ttccatgtttcattacttgaaaagtttcctcagccagccaactcattcaagggaacactc
aatctcctttccttaggtcattcctctgaagaaaagcagacttcccttgacttccaaagc
actgattcattgcagcagcatatatctgatttggagaaaaaacgaacaccagcagccgtg
caagtgaaggtggaaacttgtatagagaatcggatgtgggccacaagaatgacaaagcat
gtcatggaaatgaataagcacttgcaatcacgtttgcttgacttgatggagtacagattg
ttttggtctactcaaattgactcacccacatctaaaaagagaaagatgctcaaggttgag
agttcaattctagagggagaggaggaaccatag
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