KEGG   Quercus lobata (valley oak): 115964055
Entry
115964055         CDS       T07350                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115964055
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:qlo03041]
    115964055
Spliceosome [BR:qlo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    115964055
 Complex C
   U5 SnRNP specific factors
    115964055
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 WD40_Prp19 WD40_Gbeta WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st WDR55 EIF3I Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_Aladin Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_WDR41 Beta-prop_TEP1_C Beta-prop_EIPR1 NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_SPT8 WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_WDR35_TULP_N Tricorn_2nd Beta-prop_WDR19_1st eIF2A Beta-prop_HPS5 Beta-prop_WDR75_2nd Beta-prop_RIG_1st Beta-prop_ACSF4 Beta-prop_DCAF12 Beta-prop_Nup120_160 Beta-prop_VPS8 Beta-prop_NWD2_C Nbas_N RMC1_N PEP5_VPS11_N
Other DBs
NCBI-GeneID: 115964055
NCBI-ProteinID: XP_030939205
UniProt: A0A7N2MU90
LinkDB
Position
10:complement(57053751..57060051)
AA seq 345 aa
MEVIPSGGENALSTVGPRPMEWSTVPYSTPQAPGPNGKQRTSSLESPIMLLTGHQSAIYT
MKFNPAGTVVASGSHDKEIFLWNVHGDCKNFMVLKGHKNAVLDLHWTTDGSQIISASPDK
TLRAWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP
DKYQITAVGFSDASDKIFTGGIDNEVKVWDLRKGEVTMTLQGHQDMITGMQLSPDGSYLL
TNGMDCKLCIWDMRPYAPQNRCVKVMEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYI
WDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCGSDKQIYLGEI
NT seq 1038 nt   +upstreamnt  +downstreamnt
atggaagttattccatcagggggtgaaaatgctttgtctacagttggtccaaggccaatg
gaatggtctactgtcccatatagtactcctcaagcacctggaccaaatggaaaacagcgg
acatcaagtttggaatcgccaatcatgttgctgacgggccatcagagtgccatatataca
atgaagttcaatcctgcaggaacagttgttgcatctgggtcccatgataaagaaattttt
ctgtggaatgtgcacggggattgcaagaacttcatggttttaaaagggcacaagaatgca
gttttggatcttcattggaccactgatggatcacagataatatcagccagccctgacaaa
acgctgagggcatgggatgttgaaacaggaaaacaaatcaagaaaatggcagaacactcc
tcattcgtgaattcatgctgtccatctcggagagggccaccacttgttgtcagtggatct
gatgatggaactgccaaactgtgggatatgcgtcagaggggtgctattcagacatttcca
gataaataccaaatcacagccgtcggtttctcagatgcatctgataagatcttcacaggt
ggtattgacaatgaagtaaaggtatgggacttgcgcaaaggtgaagttacaatgacactt
caaggtcatcaagatatgataacaggtatgcagttgagtcctgatggctcctatcttctt
acaaatggtatggattgcaaactctgcatatgggatatgcgtccatatgcaccacaaaat
cggtgtgtaaaggtaatggaagggcaccaacacaactttgaaaagaacttgttgaagtgt
agctggtcacctgatggaagcaaagtcactgccgggagttcagatcggatggtatacatt
tgggatactacatctagacgcatcttgtataagctccctggtcacactggttcagtcaat
gagtgtgtcttccatcccagtgaacctattgttggatcttgcggtagtgataaacagatt
tatttgggggagatctga

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