Quercus lobata (valley oak): 115965413
Help
Entry
115965413 CDS
T07350
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115965413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
qlo04131
]
115965413
Membrane trafficking [BR:
qlo04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115965413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
Clathrin
TPR_Vps41
Beta-prop_EML_2
WD40_WDHD1_1st
TPR_VPS8_2
Beta-prop_TEP1_2nd
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_HPS5
zf_RING_Vps8
WDR55
zf-RING_Vps41
Beta-prop_Aladin
WD40_Gbeta
Motif
Other DBs
NCBI-GeneID:
115965413
NCBI-ProteinID:
XP_030940489
LinkDB
All DBs
Position
10:65011175..65026216
Genome browser
AA seq
1719 aa
AA seq
DB search
PSPYNRRNPQRLRFLPSLHSRPGSSKPLPSLFRRVRSNAKPGAALAAAAAASRALPTPHA
AAIKSRRAASQFQKVLEDSDAVSVSGAMEVESEAQNVVQVDGLKVSSNHEELLQTSADSV
PNFDIIEPRIGSSSISVEEEDENNVNVDENASVLDRSSEILNSEEDKVDHLEEKVEEEST
IGALETQQQVNVLKDTEVGGGDDDDATSLSDITEERIGQLGSRRISKRAEKKSRAASMKP
LELAEELEKKHASTGLHWEEGAAAQPMRLEGVRRGSTTLGYFDLDADNAITRTISSQAFR
RDHGSPQALAVHTNYIAIGMSKGVILVVPSKYSGYNADHMDPKMSMLGLQGDRSHAPVTS
MCSNQQGDLLLAGYGDGLITVWDVQRSSSAKVITGEHTAPVVHTLFLGQDSQVTRQFKAV
TGDSKGLVLLHAFSVVPLLNRFSIKTQCLLDGQKTGIVLSASPVLFDEFSGGASLSSQGN
NAASSSSLGSMMGGVVGGDAGWKLFNEGSSLAEEGVVIFVTHQAALVVRLTPTLEVYSQL
SKPDGVQEGSMPYTAWKCMTQSRSLPSENVPVEASERVYLLAIAWDRKVQIAKLIKSELQ
VYGKWSLDSAAIGVAWLDDQILVVLTSTGQLCLFAKDGTVIHQTSFSLDGYGGDDLVAYH
THFINIYGNPEKAFHNCIAVRGASVYILGPMHLAVSRLLPWKEQIQVLRKAGDWMGALNM
SMTLYDGQVHGVIDLPGTLDAVQEAIMPCLVELLLSYVDEVFSYISVAFCNQVEKMEPLD
NPNSRSSSVHSEIKEQYTRVGGVAVEVCVHIKRTDILFDEIFSKFVAVRQRDTFLELLEP
YILKDMLGSLPPEIMQALIEHYSSKGWLQRVEQCILHMDISSLDFNQVVRLCREDGLYGA
LVYLFNKGLDDFRAPLEELLVVLRNSQKESAAALGYRMLVYLKYCFSGLAFPPGQGTLPP
TCLPSLRTELLQFLLEHSDAPNPKAVSSLSSGGPYLNLYHLLHLDTEATLDVLRCAFVED
EIPKPKLSSHDSADKNTEPKIENDNGCQNILVQDTVSSLICILNRDISQTERSDSEDVSG
LVEEWPSKKDIGHMFEFIAYYVACGSANVSRSVLSQILEYLTSQNNFPTSVSSHHITSTR
REKQVLALLEVVPEIDRNASSVLGLCEKAQFYQVCGFIHTIRQEYLAALDSYMKDVDEPI
HAFSFINKTLLQLSDNERAIFQSAVISRMTELVDLSREGTFLLFIGHFKNEGLHILSKLR
SHPRSLFLYIKTDIEVQLSGTLNFSSLRXDDFLDPSDGIRLKDQSKGLEAYLEKISDFPK
LMRNDPVEVTDDMIELYLELLCQYEPGSVLKFLETFDSYRVEHCQCLCQEYGIIDAAAFL
LERVSDVGSALLLTLSGLDGKFVELDTAVGNVVSDVALSSAADTMHLRTVLNMKEVNEIR
NILNACIGLCQRNTPRLNPEESETLWFRLLDSFCEPLMDSYGDEMVSRGENHVPLLTESS
VSHEDEACIVNWRISKSHRGAHILRKLFSQFIKEIVEGMIGYVRLPTIISKLLSDNGSQE
FGDFKLTILGMLGIYGFERRILDTAKSVIEDDTFYTMSLLKKGASHAYAPRSPICCICNC
LFSKNSSSFSICVFNCGHATHLQCEVPENEASSRGASSGCPVCMPKKKSHKARNKSILAE
NGLVSKFLSRPQQSHGTSILHPHESDALENFYGISKFHR
NT seq
5160 nt
NT seq
+upstream
nt +downstream
nt
ccctcgccgtacaatcgacgaaatcctcaacgcctccgattcctcccatcgctccactcc
cgtcccggttcctcgaagccgttaccgtcgcttttccgccgtgtgagatcgaatgcgaag
ccgggggcagcgcttgcggcggcagccgcagcctccagggctctcccgaccccgcacgcc
gccgcgatcaagtcgaggagggctgcctcccagttccagaaggttcttgaagattccgat
gcggtttcggtctcgggtgctatggaggtcgaaagcgaagcccaaaatgtggttcaagta
gatggattaaaggttagtagtaatcatgaagaattgctgcaaacaagtgctgattcagtt
cctaattttgatatcattgagccgcggattggttcttcgtccataagtgttgaggaggag
gacgaaaacaatgtaaatgtagatgagaatgcttctgtgcttgacaggagctctgaaatt
ttgaactcagaagaagacaaggttgatcatttggaagagaaggtagaggaggaatcgaca
attggggcattggaaacacagcaacaagtgaatgttttgaaagatactgaggtgggtggt
ggcgatgatgatgacgcaacttcattgagtgatattactgaagagagaattgggcaattg
gggagcaggaggattagtaagagagcggagaagaaatcccgggctgcttctatgaagcca
ttggagttagctgaggagcttgagaagaagcatgcttctactggtttgcattgggaagag
ggtgcagctgctcagccaatgaggcttgagggcgtacggagaggatcaaccacattagga
tactttgatcttgatgcggataatgctattacaaggaccatttcttctcaggcattcagg
agagatcatggttcccctcaagctttggctgttcatactaattatattgcaattggaatg
tcaaaaggggtcattcttgttgtgcccagtaaatattccggttataatgctgaccacatg
gatccaaagatgtcgatgctcggtctgcaaggggataggtctcatgcccctgtaacttcc
atgtgctctaatcagcaaggggacctgctcttagctggttatggtgatggtcttattact
gtttgggatgtacagagatcatcatcagcaaaagttattactggagagcatacagcacca
gtagtacatactttatttctggggcaggattctcaggttactcgtcaatttaaagcagtt
actggtgatagtaagggtctcgttctgttgcatgctttctcagttgttcccttgctcaat
aggttctccatcaaaacccagtgtcttcttgatggacaaaaaacgggaattgtgctatca
gcttcacctgtcctttttgatgaattctctggaggtgcttccctgtcctctcagggaaac
aatgcagcttcatccagcagtcttggtagtatgatgggaggtgtagtaggtggagatgct
ggctggaaactctttaatgaaggctcttctttagctgaagaaggtgtggtcatatttgtc
acccatcaagctgctctggtggtaaggcttactcctactttggaagtctattcgcagctt
tctaagccagatggggttcaagagggttctatgccttatactgcgtggaaatgcatgaca
caatcacgcagtttgcctagtgaaaacgttcctgtagaagcttcagagagagtctacttg
ctcgcaattgcttgggaccgaaaagttcagattgcaaagttaatcaaatcagagctacaa
gtatatgggaaatggtctcttgacagtgcagctataggtgtggcttggttggatgatcag
atactggttgttcttacatcaactggacaactctgtctgtttgctaaggatggaactgtg
attcaccaaacaagtttttctctggatggttatggtggagatgatcttgttgcgtaccat
acccacttcattaatatctatggaaatcctgagaaagcttttcacaattgcatagctgta
agaggagcttcagtatacatccttggacctatgcatcttgctgtttctcgccttctccca
tggaaggaacagattcaggttctgcggaaagcgggtgactggatgggtgcactgaacatg
tcaatgacactttatgatggccaggtgcatggtgttattgacctccctggaaccttggat
gctgtacaggaggccataatgccctgccttgtggagttgcttttgtcatatgtagatgaa
gtattttcttatatttcggtggcattttgcaatcaagttgagaaaatggaaccactggac
aacccaaatagtagaagcagttctgtgcactctgaaataaaagagcaatacactcgtgtt
ggtggagttgctgtggaagtctgtgttcatatcaagaggactgacatcctttttgatgaa
attttctccaagtttgtggcggtacgacagagagacacatttttggagcttttggaacca
tatatattgaaggacatgcttggatcactgcctcctgagattatgcaagcacttatagaa
cattacagcagcaaaggatggttacaacgagttgaacaatgcatccttcacatggatatc
tcttctttggatttcaatcaggttgttaggttatgtagagaggatggattatatggtgct
ctagtgtatctcttcaataaaggattggatgattttagggctcctttagaggagctgttg
gtggtcttgcgaaatagtcaaaaggagagtgctgctgcccttgggtaccggatgcttgtt
tatctaaaatactgtttttcaggtcttgcttttcctccaggacaaggaactctgccccct
acatgcttgccatctcttagaacagaacttctgcaatttctgttagaacattctgatgcc
cctaacccaaaagctgtttcaagcttatcatctggaggaccatacctgaacctgtatcat
ctcttacacttagatactgaagctactttagatgttctgagatgtgcttttgtagaagat
gaaatcccaaaacccaaactttcatcacatgattcagcagataaaaatacggagccaaaa
atagagaatgacaatggatgtcaaaatatattggtccaagatacagtgagctctcttatt
tgtattcttaatagggacatttcccaaacagagaggtcagatagtgaagatgtcagtgga
ttggttgaagaatggccttctaagaaagacataggtcatatgtttgagtttatagcatac
tatgttgcatgtggaagtgctaatgtctcaagaagtgtcctgagtcagattttagaatac
ttgacatcacaaaataattttccaactagtgtttcctcacatcacataacttcaacaaga
agggagaagcaggtgcttgcccttctagaagtagtgcctgagattgaccggaatgcttct
tctgtattaggcctatgtgagaaagcacaattttaccaggtttgtggcttcattcatact
atcagacaggagtatcttgctgctttggatagctacatgaaggatgtagatgaacccatt
catgctttctcctttatcaacaaaacattattacagctgagtgataatgaacgtgctatt
tttcaatcagcggtcatttctcgtatgactgagctggttgatttaagcagagagggaaca
ttcttgttgttcatcggtcatttcaagaatgaaggtttgcatatcctgtctaaactccgc
tctcatccaagaagcctattcctttatataaaaacggacattgaggttcagttatctggc
actctcaatttttcttctttaagatgagatgattttttggatccttctgatggaataagg
ttgaaggatcagtcaaaaggacttgaggcttacttggaaaaaatctctgatttccccaag
ttaatgcgtaatgatccggttgaagtgactgatgatatgattgagctttatctggagcta
ttatgtcagtatgaacctggttcagttctcaaattccttgagacctttgatagctatcgt
gtggaacactgtcaatgcctgtgtcaggaatatgggattatagatgctgctgccttcttg
ttagaaagggttagtgatgtggggagtgctcttttacttacactttcaggccttgacggt
aaatttgttgagcttgatactgctgttggaaatgtggtttctgatgtggctttgagttct
gctgctgatacaatgcatctcaggactgtattaaatatgaaggaggtgaatgaaatacgc
aatatattgaatgcctgtattggattatgtcagcggaacacccctcgcttgaaccctgag
gagtcagagacgctctggttcagattacttgactcgttttgtgaacctttgatggattca
tatggtgatgaaatggtatctagaggagaaaatcatgttccactgctgaccgaatcatca
gtctcacatgaagatgaagcatgcatagttaattggagaatatcaaaatcgcacagaggg
gctcatatcttgaggaaattgttctctcagttcatcaaagagattgttgagggaatgata
ggatatgttcgccttccaaccatcatttcaaaactcctctctgataatggcagccaggaa
tttggtgattttaaacttaccatactgggcatgctcggaatatatggctttgaaaggcga
attctggacactgccaaatccgtaatagaagatgatacattctataccatgagcttactt
aagaagggggcctctcatgcgtatgcaccccggagtcctatatgttgtatatgtaattgc
cttttctcgaagaattcttctagctttagcatttgtgtttttaattgtggtcatgcaaca
catcttcaatgtgaagttccggaaaatgaggcatcaagtagaggtgcctcatctggatgc
ccagtttgtatgccaaagaagaaatctcacaaagcaagaaataaatcgattcttgcagaa
aatggtttagtaagtaaatttttgtccaggccacaacaatcacatggaactagtattcta
cacccccatgaaagtgatgcattagagaatttctatgggattagcaaatttcacaggtaa
DBGET
integrated database retrieval system
