Quercus lobata (valley oak): 115965582
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Entry
115965582 CDS
T07350
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115965582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115965582
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
115965582
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
Cytochrom_D1
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
115965582
NCBI-ProteinID:
XP_030940701
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Position
10:complement(20146064..20151819)
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AA seq
439 aa
AA seq
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MENSSLEETLQAGKLYRNLNSLIVAHLRDNNLNQAASAVASATMTPLNVEVPPNKLLELF
AKGLAVEKDEMLKGVTSSALYDLGTSLPAAAYGSIPAPRTATVDFSAVQDAKGSSKSFPK
HETRHLSEHKNIARCARFSPDGRFVATGSADTSIKLFEVAKIKQMMLPDARDGPVRPVIR
TFYDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKMTAKRAFRVIQDTHNVRSVSFHP
SGDFLLAGTDHQIPHLYDVNTFQCYLSSNVPEIGVNGSINQVRYSSTGGMYVTASKDGAV
RLWDGVTANCVRSIVGAHGAAEVTGANFTKDQRFVLSCGKDSTVKLWEVGTGRLVKQYLG
ATHLQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVARWPSNHIGAPRWLEHSPVE
AAFVSCGTDRSIRFWKEVL
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggagaacagcagcttggaggagactctgcaagctgggaagctctacagaaacctcaat
tctctcattgttgctcatcttagagacaacaatctcaaccaggctgcaagtgcagttgct
tctgcaactatgacaccattgaatgtcgaagttccacctaataagcttcttgagctcttt
gctaagggtcttgcagtggagaaagatgagatgttaaaaggggtcacttcatctgcattg
tatgatttgggcacttcattgcctgctgctgcatatggctcaatccctgctcctcgaacc
gctactgttgatttcagtgctgtgcaagatgcaaaaggctcatcaaagagttttccgaag
catgagacacgacatctttcagagcacaagaatattgccagatgtgcaagattcagtcct
gatgggaggtttgttgccactggaagtgcagacacatcaataaagctctttgaggttgca
aaaattaagcaaatgatgctgccagatgcaagggatggtcctgtgcgacctgtcatacga
acgttttatgaccatatacaaccaataaatgatttggatttccatcctcaaaatactgtt
ctgatatctggggccaaagaccacactataaagttctttgatttttccaaaatgaccgca
aagagagcattcagagttatccaggatacgcataatgtgcgttctgtatcttttcatcct
tctggggattttcttttagcaggaactgatcaccaaatcccacatttgtacgatgtcaat
accttccagtgctatctatcttcaaacgtcccagagataggtgttaatggatccataaat
caggttaggtattcatctacaggtggcatgtatgttacagcatctaaagatggtgctgta
cggttatgggatggagtaactgcgaattgtgtgcgatccatagtcggtgcacatggagca
gctgaggtcactggtgcaaattttacaaaggatcaaagatttgttctctcctgtgggaag
gattctaccgtgaagctttgggaagttggcactggaagattggtcaaacaatatcttgga
gctacacatctgcagctgcggtgccaggctgttttcaatgacactgaagaatttgtatta
tccatagatgaaccaagcaatgagattgtaatttgggatgctctgacggcagagaaagtc
gcaaggtggccttccaatcatattggtgcaccccgctggcttgagcattcaccagtagag
gcagcctttgtttcctgtggcactgataggtctattcggttctggaaggaagttctctag
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