Quercus lobata (valley oak): 115965665
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Entry
115965665 CDS
T07350
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03030
DNA replication
qlo03420
Nucleotide excision repair
qlo03430
Mismatch repair
qlo03440
Homologous recombination
qlo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115965665
03420 Nucleotide excision repair
115965665
03430 Mismatch repair
115965665
03440 Homologous recombination
115965665
03460 Fanconi anemia pathway
115965665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
qlo03000
]
115965665
03032 DNA replication proteins [BR:
qlo03032
]
115965665
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115965665
Transcription factors [BR:
qlo03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
115965665
DNA replication proteins [BR:
qlo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
115965665
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
115965665
MMR (mismatch excision repair)
115965665
DSBR (double strand breaks repair)
HR (homologous recombination)
115965665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
115965665
NCBI-ProteinID:
XP_030940799
UniProt:
A0A7N2MQJ7
LinkDB
All DBs
Position
10:19696421..19700870
Genome browser
AA seq
628 aa
AA seq
DB search
MTKCVSPDAISTILANPSPESSSDVPEIVVQVIELKATGASGNRFMFTANDGKMKLRGIL
PTNMGSEVMSGNIQNLGLIRILDYTLNDIPNKPEKYLIVTKCEVVSPPLEMEVKSEVKSE
ETGIVLKPKQENEIKSEVKSEVPGIFLKPKQEIVAKSAAQIVHEQRQNMAPAARMSMTRR
VFPLVSLNPYQGSWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAA
KKFYDRFQLGKVYFISRGTLRLANKQFKTVKNDYEMTLNENSEVEEASNEETFVPETTFD
FVPIDSLGPYVNGMELVDVIGVVQNVSPTMSIRRKSNNDTIPKRDITIADETKKTVVVSL
WNDLATSVGQELLDIADKSPIVAIKSLKVGEFQGVSLSTLGRSVALVNPDLPEAKKLRSW
YDSEGKESSLASVGSGLSPSSKSGSRSMYSDRVSLSHIQKNPSLGEEKPVFFSIRGYISF
IKPDQAMWYRACKTCNRKVTEALGSGYWCESCQKNDEECNLRYIMVVKISDASGEVFLSI
FNEEAEKIVGCSAEELDKLKSEEGEENPYQLKLKQATWNSHLFRVSVSQNEYNNEKKQRI
TVRAVAPVDFAAESRFLLEEISKMRVSK
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagtgtgtgagtccagatgcgatctcgactattctggcgaacccatcgccggaa
tcttcctccgatgtccctgagatcgtcgtccaggtcatcgagctcaaggccaccggtgct
tccggtaaccgttttatgtttacagctaacgatggaaagatgaagctaaggggaattctc
ccaacaaacatgggttctgaggtcatgtctggaaatattcagaacctgggtctgattcgc
attcttgattatactctcaatgacattccgaataagcctgagaagtatctgattgtcaca
aaatgtgaggtggtttctccaccgcttgaaatggaggtcaaatctgaggtcaagagtgag
gaaactggtattgtattgaagccaaagcaagaaaatgagattaagagtgaggtaaaaagt
gaagtgcctgggatttttttgaagccaaagcaggaaattgttgctaaatcagctgctcag
atagtacatgaacagcgccaaaatatggccccagctgcacggatgtcaatgacgcgaaga
gttttccctctggtgtccttgaacccttaccaaggtagttggaccataaaggttcgtgtc
actagcaaaggaaatatgcgtacctataagaacgcgagaggagaaggctgtgttttcaat
gtagagttaacagatgaagatggcacacaaatacaagcaacaatgttcaatgaagctgca
aagaaattctatgacaggtttcaattggggaaggtttatttcatttcaagggggactcta
agacttgctaataagcagtttaagacagtgaaaaatgattatgaaatgaccttgaatgag
aattctgaagtagaagaggctagcaatgaagaaacttttgttcctgaaacaacattcgat
tttgtcccaattgatagtttaggtccttatgtcaatgggatggagcttgtggatgtcatt
ggtgttgttcaaaatgtctcccctacaatgagcattcggaggaagagcaacaatgatact
atcccaaagcgtgatattactattgctgatgagacgaaaaagacagttgtggtctccttg
tggaatgaccttgcaacaagtgtggggcaggaattgctggatattgcagataaatcacct
atagttgcaattaaatcccttaaagttggggaatttcaaggtgtatctttgtcaacactg
ggcagaagtgttgcgcttgtaaatccagatttacctgaagcaaagaagttgagatcctgg
tatgattctgagggtaaagaaagttcattggcatctgtcggttctggtttgagcccatca
tcaaagagtggttcaaggtcaatgtactctgatcgggtctctctttctcacatacagaag
aacccatccttgggtgaggaaaagcctgtatttttcagcattagaggatacataagcttc
atcaagcctgatcaggcaatgtggtaccgggcttgcaaaacttgcaacaggaaagtgaca
gaggctttggggtctgggtattggtgtgaatcatgccagaaaaatgatgaagagtgcaat
ttaagatacataatggtagtcaaaatttctgatgcaagtggtgaagtttttttatctatc
tttaatgaggaagcggagaaaattgttgggtgctctgctgaagagcttgataagttgaaa
tcagaggagggagaggagaatccataccaactaaaattgaagcaagccacctggaattct
catcttttccgggttagtgtttctcagaatgagtacaataatgagaagaagcaaaggatc
acagtcagggctgttgctcctgttgattttgctgctgaatcaagatttttgcttgaagag
atctcaaagatgagagtttctaagtag
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integrated database retrieval system
