Quercus lobata (valley oak): 115966043
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Entry
115966043 CDS
T07350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115966043
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
115966043
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
115966043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
DEXQc_Suv3
AAA_19
T2SSE
Tc-R-P
Motif
Other DBs
NCBI-GeneID:
115966043
NCBI-ProteinID:
XP_030941241
LinkDB
All DBs
Position
10:complement(19272667..19310821)
Genome browser
AA seq
2146 aa
AA seq
DB search
MRNTPSTSSSSSRSGDKNCTKKETFQEFQKKPSHKDLLREETLSRVSENFKPPHAKSARM
LVQLPRLTNSLRNPFDVDQAYLHRKLILENLNKPRNSASTIDESELARKIVYQWEEASFE
VRQAYKQFIAAVVELIDGEVPSEAFREVALTAYRLFGPVEEDNVDRNIAEKKLDLQKLLG
HMVSDANLQRVASLAQNLFRLQPSDHGPILISEWHVNGSGDDIEFGADLVFQAPARFLVD
VSLEDGELLGEERTVPSLFHEGWYEHDSSPHYPSASDGGNYNLSWLRDGCERIVGGSTSL
LSRDELAMAICRVLDSDKPGEAIAGDLLDLVGDSAFETVQELVSHRKQLVDAIHHGKLGL
KSDKTTSNTQSRMPSYGTQVTVQTESERQIDKLRRKEEKRHRRGTEYGVESDLSAANFSS
LLQASERKSPFDDLIGSGPGPLSLAVTALPQGTVRKHHKGYEEVIIPPLPTAEMKPGEKL
IEIKELDDFAQAAFRGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEI
GQHFKDGYLHKNEFKIVYVAPMKALAAEVTSTFSHRLSPLNMTVRELTGDMQLSKNELEE
TQMIVTTPEKWDVITRKSSDMSLSMMVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESS
QTMIRIVGLSATLPNYLEVAQFLRVNPEAGLFFFDSSYRPVPLAQQYVGISEQNYLARNE
LLNEICYKKIVDSLRQGHQAMVFVHSRKDTAKTAQKLVELGRKFDDLDLFSNDKHPQFDL
IKREVVKSRNKDLVELFEYGIGVHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNL
PAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLR
LLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRLNPLAYGIGWD
EVIADPGLSSKQRALVTDAARSLDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETY
NEMLRRHMNESEVIEMVAHSSEFENIVVREEEQNELEMMARNSCPLEVKGGPSNKHGKIS
ILIQLYISRGSIDTFSLVSDAAYISASLARIMRALFEICLRRGWSEMSLLMLEYCKAVDR
QIWPHQHPLRQFDRDISAEITRKLEERGADLDRLYEMQEKDIGALIRYAHGGKLVKQYLG
YFPWIQLSATVSPITRTVLKVDLFITPDFTWKDRFHGAALRWWILVEDSENDHIYHSELF
NLTKRMARGEPQKLSFTVPIFEPHPPQYYIRAVCDSWLHAEAFYTISFHNLALPEGRTSH
TELLDLKPLPVTSLGNSSYEALYKFSHFNPIQTQTFHVLYHTDNNVLLGAPTGSGKTISA
ELAMLRLFNTQPDMKVIYIAPLKAIVRERMNDWKKRLVSQLGKEMVEMTGDYTPDMMALL
SADIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQ
TERAVRFVGLSTALANAGDLADWLGVAEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMN
SMNKPTYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEQPRQFLNMPEEAFQMV
LSQVTDQNLRHTLQFGIGLHHAGLNDKDRSLAEELFANNKIQVLVCTSTLAWGVNLPAHL
VIIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYE
PFPVESSLREQLHDHINAEIVSSTICHKEDAVHYLTWTYLFRRLTVNPAYYGLESTDSEI
ISSYLSRLVQNTFEDLEDSGCIKMSDDIVEPMMLGSIASQYYLSYMTVSMFGSNIGPDTS
LEVFLHILSAASEYNELPVRHNEENYNEALSERVRYMVDKNRLDDPHVKANLLFQAHFSQ
LELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMRLLQMIMQGLWFDVDSS
FWMLPSMNVDLASSLNKRGISTVQQLLDLPKATFQTVIGNSPASRLNQDLQHFPIVQVRL
KLQRRDTDGAKSPTLTIRLEKINFKRNKSRAFTPRFPKVKVEAWWLVLGNTSTCVLYALK
RISFSDRLVTHMELPSTLGSLQGMKLILVSDCYLGFEQEYSLEDLH
NT seq
6441 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaacacaccttcaacttcttcttcaagctctcgctccggcgacaaaaattgcacc
aagaaagaaacgtttcaagaatttcagaaaaaaccttcgcacaaagatcttctccgagaa
gaaacgctttctagggtttcagaaaattttaaacctccacacgcaaaatcggcaagaatg
ttggtccaacttcctcgcttgactaactctctgagaaaccccttcgatgtcgaccaggcc
tatctccatcggaaactcatcctcgagaacctcaataagcctcggaattctgcgagcaca
attgatgaatctgaacttgcacggaaaattgtatatcaatgggaagaagcttcttttgaa
gttcggcaagcatataaacagttcattgcggcggtagtggagttgattgatggagaagtg
ccctctgaagcgtttcgtgaggtggcactcactgcttatcgtctttttggtccagtggag
gaggacaatgttgatagaaatattgctgagaagaagttggacttgcaaaaacttcttggt
cacatggtttctgatgctaacctgcagagagttgcctctctagctcaaaatctttttaga
ttgcagcctagtgaccatgggcctatacttatttcagagtggcatgtaaatgggagtggc
gatgatatagaatttggagctgaccttgtttttcaagcacctgctcggtttctggtagat
gtttctttggaggatggggaattattgggtgaggaaaggactgtaccttctttgtttcat
gaaggctggtatgaacatgacagctctccacattacccttctgcttctgatgggggaaac
tataatttgagttggttaagagatggatgcgaacggatagttgggggaagtacttcactg
ctttcacgcgacgaactggcgatggccatttgccgggtgcttgattcagacaaacctggc
gaggcgattgctggtgatttgttggatcttgttggggatagtgcattcgagactgttcaa
gaacttgtatcgcatcggaagcaacttgttgatgctatccatcatggtaagcttggactg
aaatctgacaaaacgacttcaaatacacaatcacgaatgccgagttatggtactcaggtt
acggttcaaacagagtctgaaaggcaaattgataaacttcggcgcaaggaggaaaaaagg
catagacgaggaacagaatatggggttgagagtgacttgtctgctgcaaatttttcttct
ttacttcaagcaagtgaaaggaagagtccatttgatgatctaattggatctggcccagga
cccctctcactagcagttactgctcttcctcaaggaactgtcaggaagcatcataagggc
tatgaggaggtcatcatccccccattgccaactgcagaaatgaaacctggagagaaactg
attgagataaaggaattagatgacttcgcacaagctgcttttcgtggctacaagtctctg
aaccgcatccagagccggatatttcaaacagtttattacactaatgagaatatactagtt
tgtgctccaacaggagctggcaaaacaaatattgctatgatttccattctacatgagatt
ggtcagcacttcaaggatggttacttgcataaaaatgagtttaagatagtttatgttgct
cctatgaaggcattagctgcagaggtcacttcaacatttagtcaccgtttatctccactg
aacatgactgtgagagaacttactggagacatgcaactttcaaagaatgaacttgaagaa
actcagatgatagtgacaacacccgaaaagtgggatgtcattacgcgcaagagtagtgac
atgtcactttcaatgatggtgaagctcttaattatcgatgaagtgcatctcttgaatgac
gatagaggccctgtaatagaggcacttgttgctcggaccctccgtcaggtggagtcatca
caaacaatgatacgtatcgtggggctttcagccaccctaccaaattatttggaggtggca
caatttctgagagtgaatccagaggcgggactcttcttctttgattctagttatcgtcct
gtgcctcttgctcaacaatatgttggaattagtgagcagaactatttagctcgcaatgaa
ttgctgaatgagatttgctataaaaagattgttgattcattaaggcaaggtcatcaggca
atggtgtttgttcattcacgtaaggacacagcaaaaacagctcagaaattggttgaactt
ggccgaaaatttgatgatcttgatctctttagcaatgataaacatccacagtttgactta
atcaagagggaagtagttaagtccagaaacaaagatcttgttgaactttttgaatatgga
atcggtgttcatcatgctgggatgctacgtgctgatagaggtttgactgagcggcttttc
tctgatggactcttgaaggtacttgtttgtacagcaactttggcatggggtgtaaatttg
cctgctcacactgttgtgatcaaggggacacaattatatgatccaaaggctggtgggtgg
cgagatctaggcatgcttgatgttatgcagatctttggacgggctggtagacctcagttt
gacaaaagtggtgaaggcatcatcatcacatcccatgacaaactagcctactatttgcgg
ttgctgacgagtcaactccccattgaaagccagtttattagctccctgaaagataattta
aatgcggaagtagctttgggtacagtcactaatgttaaggaagcttgtgcatggcttgga
tatacatatctttttataaggatgaggttgaatccgttggcatatggtattggatgggat
gaggttattgcagatcctggtttaagttcaaagcaaagagctcttgtaacagatgctgca
cggtcacttgacaaagcaaaaatgatgcggtttgatgagaaaagtggcaatttttactgt
acagagcttggtcgcattgcaagccacttctatattcagtattctagtgttgaaacttac
aatgaaatgttgagacgccacatgaatgagagtgaggtaattgaaatggttgcccattcc
tctgaatttgaaaatattgttgttcgtgaagaggaacagaatgagttagagatgatggca
cgcaattcatgtccgttggaagttaagggtggtccttcaaataaacatggaaaaatttcc
attcttattcagttgtacatatctcgagggtcgattgataccttttcattggtttctgat
gctgcatatataagtgctagtttggctcgtattatgagggctttattcgaaatttgtttg
cgcagaggctggtctgagatgtctttgttaatgttggaatattgcaaggctgtggatcgg
caaatttggccccatcaacatccacttagacaatttgatagggatatttcagcagaaata
acgcgaaagcttgaagaacgaggggctgatttagatcgcctgtatgagatgcaggaaaag
gatatcggagcactgattcgttatgcacatggaggaaagttggttaagcaatatttagga
tatttcccatggatccagttatcagcaactgtaagtccaatcaccagaactgttctgaag
gtggatctgttcataacgccagactttacatggaaagatcgttttcatggtgctgctttg
cgttggtggattctagttgaggattcagagaatgaccatatctaccactctgaacttttc
aatctgacaaagcggatggctagaggggaacctcagaagctttccttcactgtgccgata
tttgaaccacatccaccccaatactacattcgtgctgtttgtgattcttggttgcatgca
gaggctttctataccatttctttccataatttggcactgccagagggtcgtacttcacac
acagaacttctagatttgaaacctcttccagtgacttcactgggtaacagttcttatgaa
gccttgtacaaattttcacattttaatcctatacaaacgcagacttttcatgtcctgtat
cacacggacaataatgtccttttaggagctcccactggaagtgggaaaaccatatctgct
gagcttgctatgcttcgcctctttaatactcagcctgatatgaaggttatttatatagca
ccattgaaggctattgttcgggaaagaatgaatgattggaaaaagcgtcttgtctctcag
cttggaaaggagatggttgaaatgactggagattatactccagatatgatggccctcttg
tcagctgatatcataatatctactcctgagaagtgggatggtatcagccgtaattggcat
agtcgaagctatgtcacaaaggttggtcttatgattttggatgagattcacttactggga
gctgatcgtggtcctatccttgaggttattgtttcaaggatgagatatatatcctcacaa
acagagcgtgcagtacggtttgtaggcctttcgacagctttagcaaatgcaggtgatttg
gctgattggttgggtgttgcggaaatcggtctcttcaatttcaagccaagtgtgaggcct
gtacctcttgaagttcatatccagggttatcctggaaagttttactgcccgaggatgaat
agcatgaataaacccacatatgctgcaatatgcacccattcacctacaaaaccagttctt
atatttgtttcatctcgtcgccaaacaaggcttactgctctggacctcattcagtttgca
gcttcagatgagcaaccaaggcagtttcttaatatgccagaagaagcatttcaaatggtt
ctatctcaggtcactgatcagaacctgaggcacacattacaatttggcattgggttgcac
catgctggtttgaatgacaaggatagatctctggcagaggaactttttgcaaacaacaag
atccaggtattggtttgtaccagcacattggcgtggggtgtgaaccttccagcacatctg
gtcattatcaagggaacagaatattatgatggaaaagcaaagagatatgttgattttcca
atcacagatatcttgcaaatgatgggtcgtgctggccgcccacaatttgatcaacatggg
aaagcagtcattcttgttcatgaacccaaaaagagcttctataaaaagtttttgtatgaa
ccatttccagttgagagtagtctcagagagcagttgcatgatcacatcaatgcagagata
gtttccagcacaatttgccataaggaggatgcagtgcattaccttacctggacttactta
ttccgtagactgacggttaatcctgcttactacggcttggagagtacagattctgaaatt
ataagttcttacttatctcggttagtgcaaaacacatttgaggatctggaagacagtgga
tgcatcaagatgagtgacgacattgtcgagcctatgatgttgggctcaatagcttctcag
tattacctcagctacatgactgtttctatgtttggttcaaatattggtccagacacgtcg
cttgaagtgtttctgcatatactctctgctgcttctgagtacaatgaacttcctgtgcgg
cataatgaggaaaattacaatgaagcattgtctgagagagttcgatatatggtggacaag
aatcgccttgatgatccacatgtcaaagcaaatctgctatttcaggcacatttttctcag
ttagaattaccaatcagcgactatgtcacagatttaaagtcagtgttggatcaaagtata
cgtatcatccaggccatgatagatatatgtgcaaacagtggatggctatcaagctcaatt
acttgcatgcgtcttttacaaatgatcatgcagggtttatggtttgatgtggattccagt
ttttggatgttgccatccatgaatgttgatcttgcaagttcattaaacaaaagaggaatt
tccaccgtgcagcaactgttggatcttccaaaggctactttccagactgtgattggaaat
tctcctgcttcaagattgaatcaggatttgcaacattttcccattgttcaagtgagatta
aaacttcagagaagggacactgatggtgcaaaatcccccactctaaccatcagattggag
aagatcaatttcaaacggaacaaatcaagagcttttaccccccggtttcccaaggttaaa
gttgaagcatggtggttggttcttggtaacacctccacctgtgtcttatatgctctgaaa
aggatttctttctctgatcgcttagtaacccacatggagttaccatcaaccctgggcagt
ctccagggtatgaaattgattttagtttcagattgttatcttggttttgaacaagaatac
tccctcgaagatcttcattga
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integrated database retrieval system
