Quercus lobata (valley oak): 115967662
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Entry
115967662 CDS
T07350
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03013
Nucleocytoplasmic transport
qlo03015
mRNA surveillance pathway
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115967662
09122 Translation
03013 Nucleocytoplasmic transport
115967662
03015 mRNA surveillance pathway
115967662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115967662
03041 Spliceosome [BR:
qlo03041
]
115967662
03009 Ribosome biogenesis [BR:
qlo03009
]
115967662
03012 Translation factors [BR:
qlo03012
]
115967662
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115967662
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115967662
mRNA cycle factors
Stress granule specific factors
115967662
Spliceosome [BR:
qlo03041
]
Complex C
Other components
EJC/TREX
115967662
Ribosome biogenesis [BR:
qlo03009
]
Eukaryotic type
90S particles
Helicases
115967662
Translation factors [BR:
qlo03012
]
Eukaryotic type
Initiation factors
eIF-4
115967662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
CMS1
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
115967662
NCBI-ProteinID:
XP_030942664
UniProt:
A0A7N2MWY6
LinkDB
All DBs
Position
11:22857441..22864302
Genome browser
AA seq
409 aa
AA seq
DB search
MSDLGGASMVRQNPRRVTAPEEALEFETSKEVQVVTSFAEMGIKDDLLRGIYQYGFEKPS
AIQQRAVVPILQGRDVIAQAQSGTGKTSMIGLTVCQTVDTSSREVQALILSPTRELASQT
EKVILAMGNFMSIKVHACIGGKSVGDDIRKLENGVQVVSGTPGRVCDMIKRRTLKTTQIK
LLILDESDEMLSRGFKDQIYDIYRYLPPVLQVCLISATLPHEILEMTNKFMTDPIRILVK
RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNF
TVSSMHGDMPQKERDAIMEEFRAGQTRVLITTDVWARGIDVQQVSLVINYDLPNNRELYI
HRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacctcggcggcgcaagcatggtccgccaaaacccacggcgggtcacggcgccg
gaggaggcgcttgagttcgagacctcgaaggaggtccaggtagtaacgagcttcgcagag
atgggaatcaaagacgacttgctccgcggcatctaccagtacggcttcgagaagccctcc
gcgattcagcagcgcgccgtggttccgattctccaaggccgagatgtcatcgctcaggcc
cagtcaggtaccggaaaaacctccatgattggcctcaccgtttgccagaccgtcgatacc
agtagcagagaggttcaggccttgatcttgtcaccaacaagagaattggcatctcagaca
gagaaggtgatattggcaatgggtaatttcatgagtattaaagtacatgcatgcattgga
ggcaagagtgtgggtgatgatatcagaaagctagaaaacggtgttcaggtggtgtctgga
actccaggcagagtttgtgacatgatcaaaaggagaacactgaaaactacacaaatcaaa
ttgttaattcttgatgaatctgatgagatgttgagcagagggttcaaggatcagatttat
gatatatacagatatctcccaccagtgcttcaggtttgcttgatttctgctacccttcct
catgaaattttggagatgacaaacaagtttatgacagatcctatacggatacttgtgaaa
cgtgatgaattgactctggagggcatcaaacaattttttgttgccgtggaaagggaagag
tggaagtttgatactttatgtgatctttatgatacccttacaatcacccaagctgtcata
ttctgcaacacaaagagaaaggtggattggctaacagaaaagatgcgtagcaataacttc
actgtttcatcaatgcatggagacatgcctcaaaaggagagagatgcaattatggaagag
tttcgggctggtcaaacccgtgtcctaataacaacagatgtttgggccagggggattgat
gtccaacaggtttctttggtgatcaattatgacctcccaaacaatcgtgagctttacatt
catcgtattggtcgttctggtcgttttggaagaaagggtgttgcaataaactttgtcaaa
agtgatgatattaaaatcctacgagacattgagcagtactacagtactcagattgatgaa
atgccaatgaatgttgctgatctaatataa
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