Quercus lobata (valley oak): 115967768
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Entry
115967768 CDS
T07350
Name
(RefSeq) protein CHROMATIN REMODELING 35-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115967768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115967768
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
115967768
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
115967768
NCBI-ProteinID:
XP_030942766
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Position
11:45299994..45312748
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AA seq
1006 aa
AA seq
DB search
MDPDIDYPSSAPELHSKVYKRLKISSEGGDYGHRSYPVTKHDNFKHKQQQATSRILNDSE
PSDTPNLVQVLDTSMFGSVGKEIEALCARRSQLLKHDVARNPRLPFTRSNVSNNRSKEPV
VPTVVDLSSDDEDGEHQRRSNIYQKVVLKPVGKLLMKDSMNIQKSKVVKEQVESMNGKVN
INKFRAKDDVEIDDDSHQPFQEKESNYETNTADHSLKDIQRKAPSKEVRNVSYTVDIRIE
KDEYDGSRDDVVIENDNHQIHQKEEYNLQTYAEDNGLENICKKMAVTSECSEDYHIPLSN
HAKGGAQSLSYPAKGGTQQEEARGELEIKKEKGVYVGVEDEDNYQTETENDGLQDIWKEM
SMALECSKNFALDPSSDVEVRESEEDCDHSFVLKDDLGYLCRICGVIDRGIETIFEFQYN
KYKRSTRTHISDSWNGKDRDSTEMVGVKFSEDDLTVTDISAHPRHMKQMKLHQEEGFNFL
VSNLVGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPQARPLVVLPKGILATWKKEFKT
WQVEDIPLYDFYTAKAENRSQQLEVLHKWVEHKSILFLGYKQFSTIVCDDGNSEISTSCQ
EILLKVPSILILDEGHTPRNENTDVLQSLAKVQTPRKVVLSGTLYQNHVKEVFNIINLVR
PKFLRMETSRSLVKRIMSRVDIPGARKQFKAGSDSAFYDLVEHTLQKDQDFRRKVTVIQD
LREMTSKILHYYKGDFLDELPGLVDFTVILNLSSRQKLEVQKLKKMGRNFKISSVGSAVY
LHPKLNSFSENQYASDHMVDEMIGKLDVSEGVKAKFFLNMLSLCESAGEKLLVFSQYLLP
LKFLERLAVKMKGWSLGRELFVITGDSSSDHREWSMEQFNNSPDAKVFFGSIKACGEGIS
LVGASRVIIMDIHLNPSVTRQAIGRAFRPGQKKKVFVYRLVAADSLEEEDHSICFKKELI
SKMWFEWDEYCGYQDFEVETIDVKECGDLFLESSQLGEDVRVLYKR
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggacccagatattgattatccaagttcagctccagagttgcattccaaggtatacaaa
agattgaaaataagttctgaaggaggagattatggccacagatcatatcctgtgactaag
catgataattttaaacacaagcaacaacaggccacatcaagaattcttaatgattcggaa
ccatctgacactcccaatttggtgcaagtgttggatacaagtatgtttggaagtgtgggg
aaagaaatagaggccctttgtgcacgaaggtcacaattgctgaagcatgatgttgcaaga
aatcctaggcttccctttacacgttcaaatgtgtcaaacaacaggagtaaagagcccgta
gttccaactgttgtagatcttagttcagatgatgaagacggtgaacatcagaggcgttct
aatatatatcagaaggttgtgttgaagcctgtcggaaaacttctcatgaaggattccatg
aatattcaaaagagcaaagttgtaaaggaacaagtagaaagcatgaatggaaaagttaat
attaataagtttcgtgcaaaagatgatgtagagattgatgatgatagtcaccagccattt
caggaaaaagaaagtaattatgaaactaatactgcagaccatagcctgaaagatatacaa
agaaaagctccgagcaaagaggtacgaaatgtgtcttatacagttgatatcaggattgaa
aaagatgaatatgatggctctagagatgatgtggtgattgagaatgataatcatcaaatt
catcaaaaagaggaatataatcttcagacatatgctgaagacaatggtctggagaatata
tgcaagaagatggcagtcacatcagaatgttccgaggactatcatattccacttagtaac
catgcaaaaggcggagctcaatcccttagttaccctgcaaaaggcggaactcaacaagaa
gaagcaagaggtgaacttgaaatcaagaaagaaaaaggtgtttatgttggcgtagaagat
gaagacaattatcaaactgaaactgaaaatgacgggctgcaagatatttggaaggagatg
tcaatggcattggaatgttcaaagaattttgctctagatccttcatctgatgtagaagtg
agagaaagtgaggaggactgtgatcattcttttgttttaaaggatgatcttggttatctt
tgtcgcatttgtggggttattgacagaggaattgagaccatatttgagttccagtacaat
aagtacaaaaggagtactcgaacacacatttctgattcttggaatggcaaagacagagac
tcaactgagatggttggagttaaattttctgaagatgatctgacagtaactgatatctct
gcccatccaaggcatatgaagcaaatgaaacttcatcaggaggagggtttcaattttctt
gttagcaacttggtgggtgataatcctgggggctgtatcttggcccatgctcctggatct
ggaaagacatttatgataatcagttttatgcaaagtttcctgggaaaatatccacaggct
agaccactggttgtgcttcctaaaggaatcttggcaacatggaaaaaggagttcaagaca
tggcaagtagaggatattccactgtatgatttttacactgccaaagcagaaaatcgatct
cagcaactggaggtgttgcataagtgggtagagcataagagtatcctatttcttggttac
aaacaattttctactattgtttgtgatgatggaaacagtgagatctctacttcatgtcaa
gagatacttcttaaggttccttcaattcttattctggatgaagggcacactccgagaaat
gagaacaccgacgtgttgcagtccctcgcgaaagttcagacacctagaaaggttgtactg
tcaggaaccctctaccaaaatcacgtcaaagaagtgttcaacatcatcaatcttgttcga
ccaaagtttctgcggatggaaacctctaggtctcttgtgaagcgtatcatgagtagagta
gatataccaggtgcaagaaagcagttcaaagcaggttctgattcagccttttatgacttg
gttgaacacactttacagaaggaccaagattttagaaggaaagtgacagtcatacaagat
ctgcgcgagatgactagcaagatccttcactactataaaggggatttcctagatgagctt
cctggtcttgttgactttactgtaatactgaatcttagttcaagacagaagcttgaagtt
cagaaattaaagaagatggggaggaatttcaagataagctctgttgggagtgctgtctat
cttcacccaaaactgaattctttctcagagaatcagtacgcatctgatcatatggtggat
gagatgatagggaaattagatgtgagtgagggagtgaaagcaaaattctttctcaacatg
cttagcttatgtgaatctgctggagagaagctactggttttcagtcagtatctcctaccc
ttaaaatttctggagagattagcagtgaaaatgaagggttggagtcttggaagagaactc
tttgtgattacaggtgattcaagttctgaccatcgcgaatggtccatggagcagttcaac
aattcccctgatgccaaagtgttctttggctctatcaaggcatgtggggagggtatttct
ttggttggggcatcccgtgttataataatggacattcatctgaatccttcagtgacccgc
caagctataggtcgtgcatttcgaccaggtcaaaagaagaaagtgtttgtatatagattg
gtggcagctgattcacttgaggaggaagatcacagcatttgcttcaagaaggaattaatt
tccaagatgtggttcgaatgggatgagtattgtggttatcaggattttgaagtggagact
attgacgtgaaagagtgcggtgatctcttcttggaaagttcacagttaggggaagatgta
agggttctgtacaaaagatag
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