Quercus lobata (valley oak): 115967801
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Entry
115967801 CDS
T07350
Name
(RefSeq) vacuolar sorting protein 3 isoform X1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115967801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
qlo04131
]
115967801
Membrane trafficking [BR:
qlo04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115967801
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-Vps39_C
Clathrin
CNH
Vps39_1
EF-hand_14
TPR_Vps41
Methyltr_RsmF_N
Motif
Other DBs
NCBI-GeneID:
115967801
NCBI-ProteinID:
XP_030942807
LinkDB
All DBs
Position
11:complement(17895672..17910245)
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AA seq
1038 aa
AA seq
DB search
MAKPEPEPRARTVLEPLTQFDLSTHSQSPTRSLAISTVSDSQTLIYIGTLAGTLILLQSS
PKTTSFLQAITVADGSPIDRIIVLPEIAKLLVLSDGSLFLLDSFLSQPAKKLAFFKGVSA
ITRRFRSTGNQTESTDFIDSTADSSSSEYASASQRLLQRLSGGIRSNGLKIKESEQQQQQ
QQQQQQQSEANNLGHFVFAVVIGKRLILVELVLGNRVNKTDVDVNGVYGSLVVLKEIQCI
DGVITLVWLDDSIVVGTVNGYSLFSCVTGQSGIIFTLPDMSTPPRLKLLWKEWNVLLLVD
NVGVLVDEHGRPVGGSLVFRRGGPDSIGEMSSYVVVVRDGKMEVYHKKSGRCIQSISFGG
EGVGASVVADEEVGSGKLVAVATPNKVICYRKLPSEEQIKDVLRKKNFKEAIALVEELEC
DGELSKDMLSFVHAQVGFLLLFDLHFEEAVNHFLQSETMQPSEIFPFIMRDPNRWSLLVP
RNRYWGLHPPPKPVEDVVDDGLLAIQRATFLRKAGVETLIDDDFLLNPPSRADLLESAIK
NIISMPLSLTTAVPWGKVNGGGWCRIRYLEVYQEKELTLPVREGVDTLLMYLYRALNRIN
DMEKLASSENSCIVEELETLLDDSGHQRTLAFLYASKGISSKALAIWRVLARNYSTGLWK
DPTLENDIQDTSNNGISSKEIAAVEASKILEESSDQDLVLQHLGWVADINQVLAVQVLTS
EKRANQLSPDEVISAIDPRKVEIFQRYLQWLIEDQDCDDTQFHTLYALSLAKSAIEAFEA
ENTYQNSDIGRVDETVISDNRMNSIFESPLRERLQIFLSSSDLYDPEEVLDLIEGSELWL
EKAILYRKLGQEALVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLDPQDGKEPMF
KAAVRLLHNHGESLDPLQVLEKLSPDMPLQLASETILRMFRARLHHHRQGQIVRNMSRAV
DVDARLARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCFRRQGESTSVT
GRNFKQDILIKPGWLVTR
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcccgagcccgaacccagggctcgaaccgttctcgaaccactcacccaattt
gacctctctacccactcacaatccccgacccgatccctcgccatctccaccgtctccgat
tcccaaacccttatctacatcggaactctcgccggaaccctaattctcctccaatcctct
cctaaaaccacctcctttttgcaagccattacggtcgccgatggttccccgatcgatcgc
attatcgtcctccccgagatcgcaaagcttctcgttctttccgatggatctctgttcttg
ctcgattcgtttctgtcacagcccgccaagaagctcgctttcttcaaaggagtctccgcg
atcaccaggcgatttcgtagcactggtaatcaaaccgagagtacggatttcatcgacagc
accgctgattcttcttcttcggagtacgcgagcgcgagtcaacggcttttacagaggttg
agtggtggaatcagatcaaacggtttgaaaatcaaagaatccgaacaacagcaacaacaa
cagcagcagcagcagcaacagagtgaagctaataatttaggtcacttcgttttcgcagtt
gtgattggtaaaagattgatacttgtagagctcgttttaggcaatagagtgaacaaaacc
gacgttgacgttaatggcgtatacggttctctcgtggttttgaaagaaattcaatgtatc
gatggggttatcacacttgtgtggcttgatgattccatagttgttggtacggttaacggt
tatagtttgttttcgtgtgttacgggacaaagcgggattatatttacgttgccggatatg
tctaccccgccacggctcaaattattgtggaaagagtggaatgtgttgttgttagtggac
aatgtgggtgttcttgtcgatgaacacggccggccagttggtgggagcttggtgttcagg
cgtggcggaccggattctattggggagatgtcttcctatgtggttgttgtgagggatggg
aagatggaggtgtatcataagaagtcgggtaggtgtattcaatcgataagttttggtggg
gaaggagttggagctagcgttgttgctgatgaggaagttgggagtgggaaacttgttgct
gttgcaacacccaacaaggttatttgctatcgtaaattaccttctgaagaacaaatcaaa
gacgttttgagaaagaagaactttaaagaagccattgccttggtggaggaacttgagtgt
gatggtgaattgtcaaaggatatgctctcctttgttcatgctcaagtggggtttctattg
ctgtttgacctgcattttgaggaagcagtaaatcactttttgcagtcagagacaatgcag
ccttctgaaatatttccatttataatgcgagatccaaatcgctggtcactgctggttcct
agaaaccgatattggggtttgcatccaccccctaaacctgttgaagatgttgtagatgat
gggttgttggctatccaaagagctaccttcctgagaaaagcaggtgtagaaactttaata
gatgatgattttcttttgaatccaccaagtagagctgatttattggagtcagcaatcaag
aacattatcagcatgcctctctccctaaccactgcagtgccatggggtaaagtaaacggg
ggagggtggtgcaggatcaggtacttggaagtttatcaggagaaagagttaacattgcca
gtgagagagggagttgacacactattaatgtacctttatagagctttaaatcgtattaat
gacatggaaaagctggcatcttcagaaaacagttgtatcgtggaggagttggaaacttta
ttagatgactctggccaccaacggacgcttgccttcctctatgcaagtaaagggattagc
tcaaaagctcttgctatttggcgcgttttggcaaggaattattcaactggtctctggaaa
gaccccactctggagaatgacatacaggataccagtaataatggtatctccagtaaggag
attgctgcagttgaggcatcaaagattcttgaggaatcttctgatcaagatttggttcta
caacatcttggatgggttgctgatatcaaccaggtgcttgctgttcaagttttaacatca
gaaaaaagagccaatcaactttccccagatgaagttatttcagcaattgatccaagaaag
gtagaaatttttcaaaggtacctccagtggttgattgaagatcaggactgtgatgatact
caattccatacattatatgctctatcacttgccaaatcagcaattgaagcctttgaagct
gaaaatacttatcaaaacagtgacattggaagggtagatgagacagtaatttctgataat
agaatgaactcgatctttgaaagtccacttcgagaaagactgcagatatttttgtcgtct
tcagacttgtatgatccagaggaagttcttgacttgattgaaggatcggagttatggttg
gaaaaggcaattctttacagaaaactgggtcaagaggcattagtgctccaaattttggca
ttgaaactggaagatagtgaagcagctgaacagtattgtgcagagattggcagaccagat
gcctatatgcagttactcgatatgtatttggatccacaagacggtaaggagccaatgttt
aaggctgctgttcgccttctacacaatcatggagaatcattggatcctttgcaagttttg
gagaaattgtctccagatatgcccctccaactagcctctgagacaatattgagaatgttt
agagctcgccttcatcatcatcgtcaagggcagatcgtgcgtaatatgtcccgtgctgta
gacgtcgatgcgaggttagcaagattggaggaaagatcaagacatgtccagatcaatgat
gagagcctttgtgattcctgtcatgcccgacttggaactaaactgtttgcaatgtaccca
gatgataccatcgtctgttacaagtgttttcgtcgtcagggtgagtcgacttctgtcaca
ggtcgcaacttcaagcaagatattctaatcaaaccgggttggcttgtgacccgatga
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integrated database retrieval system
