Quercus lobata (valley oak): 115967954
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Entry
115967954 CDS
T07350
Name
(RefSeq) RNA-binding protein 39-like isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qlo03041
]
115967954
Spliceosome [BR:
qlo03041
]
Common components
Common spliceosomal components
General mRNP proteins
115967954
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_8
RRM_7
Motif
Other DBs
NCBI-GeneID:
115967954
NCBI-ProteinID:
XP_030942984
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Position
11:complement(51393919..51405289)
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AA seq
606 aa
AA seq
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MDFDAYDYLEKTVENPEPGKEKEGAVNGGGEIEKSGDKERSRSSKHRSDERDDDVERRSK
RSRSEDESRYRDRDRDRQRERGSSRHRSRSRDGERDRHRSGREQRDKERDRDREERNGNV
KERDRDREKERGRDHDRERDRRERDRENEKDKEREKERSRRSRSESERQRGERDEREKSR
DKELKERERERESRERDRESRRYKEKKEEVAEPEADPERDQRTVFAYQICLKANERDVYE
FFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGLPLLGQPVMVKPSEAE
KNLVQSTTAVAGVSGGLIGPYSGGARRLYVGNLHYNITEADLRQVFEAFGQVELVQLPVD
ETGHCKGYGFVQFARLEDARNALSLNQQLEIAGRLIKVSALTDQAGMQDVGANSGDFDDD
EGGGLSLNARSRALLMQKLDRSGSGSSVAGSTGTPVVNSTGLTLPTVPILGAAPAVSPIT
PLVPALAGLGGSGLQVPIATLPTVDTIGVPSECLLLKDMFDPNDETEPDFELDIKEDVQN
ECLKFGKLKHIFVDKNSAGFVYLRFENTQGAVAAQRALHGRWFAGKMITATYMVPQAYEA
KFPDSR
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggattttgacgcgtatgattatttagagaaaactgttgagaatcctgagccggggaaa
gagaaggaaggtgcagttaatggaggtggtgaaattgagaagtctggtgataaagagcgt
agtcggagttcgaagcataggagtgatgagagggatgatgatgtggagcggcgttcaaag
cgttcgagatcagaagatgagtcgcgttatcgtgatcgtgatcgtgacagacaaagggag
aggggttcatctcgtcaccgttcacggtctagagatggggaacgggatcgacataggagt
gggcgggaacaaagggataaggagagagatagggatagagaggagaggaatgggaatgtg
aaggagagagacagggatagggagaaagagcgggggcgagatcatgatcgagaaagagat
aggagggaacgtgaccgcgagaatgagaaggacaaagagagagagaaagaacggtcccgt
agaagcaggagtgaatcagaaagacagcggggtgagcgtgatgaaagggagaagagtcgc
gacaaggagctcaaagaaagagaaagggagagagagtcaagggaacgggacagagaaagc
agacgatataaagagaaaaaggaggaagtggctgaaccagaggctgaccctgaacgggat
cagaggactgtatttgcttaccagatttgtttgaaggcaaatgaaagagatgtgtatgag
ttcttctcaaaggctggcaaggttcgagacgtacgccttataatggaccgcaattcaaga
cgatccaagggagttggttatattgagttctatgatgcaatgtcagtccctatggcaata
gcactctctggtcttcctcttcttggtcaaccagttatggtaaaaccatcagaagcagaa
aagaatctggtccagtcaactacagcagtggctggtgtatcaggtgggcttataggcccc
tattcaggaggggccagaaggctgtatgttgggaatctgcattacaacataactgaagct
gatcttcgtcaggtttttgaagcatttggtcaagtagagctggtgcagttgcctgttgat
gaaactggacattgcaaaggatatggctttgtccagtttgcacgtcttgaagatgctaga
aatgcactgagtctgaatcaacagttggagattgcgggtcggcttatcaaggtttcagct
cttactgatcaagctggaatgcaagatgttggagcaaattctggtgattttgatgatgat
gaaggaggtggcttgtctctgaatgcacgatctcgagcacttctcatgcagaagttggac
cgcagtggctctggatctagcgttgctggttccactggcactccagttgtcaatagcaca
gggcttactttaccaacagtgcctattctaggagctgcacctgcagtatctcctattact
ccccttgttcctgctcttgctggacttggtggttcaggtcttcaagttcccattgctact
ttgccaactgttgatacaattggtgttccaagtgaatgtttattattgaaggatatgttt
gatccaaatgatgagacggaaccagattttgagttggacatcaaagaagatgttcaaaat
gaatgtttgaagtttggaaaattgaaacatatatttgtagacaagaacagtgctggtttt
gtgtacttgcgatttgaaaatacacaaggtgcagttgctgcacaacgtgctctccatggt
agatggtttgctggaaagatgattactgcaacttatatggtgccccaggcatacgaggct
aagttccctgatagcagatag
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