Quercus lobata (valley oak): 115968086
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Entry
115968086 CDS
T07350
Name
(RefSeq) polyadenylate-binding protein 8-like
KO
K13126
polyadenylate-binding protein
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03015
mRNA surveillance pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115968086
09123 Folding, sorting and degradation
03018 RNA degradation
115968086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115968086
03041 Spliceosome [BR:
qlo03041
]
115968086
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115968086
mRNA cycle factors
Stress granule specific factors
115968086
Spliceosome [BR:
qlo03041
]
Complex C
Other components
Complex C specific factors
115968086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_3
RRM_Nup35
RRM_7
RRM_MARF1
RRM_RdRP1_2
PABC_AtC3H46
GH97_C
Motif
Other DBs
NCBI-GeneID:
115968086
NCBI-ProteinID:
XP_030943152
UniProt:
A0A7N2MYI1
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All DBs
Position
11:34779659..34788798
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AA seq
648 aa
AA seq
DB search
MAQVQAPPQNAIPGANGAGGANQFVTTSLYVGDLEQNVTDSQLYDLFNHLGQVVSVRVCR
DLSTRRSLGYGYVNYSNPQDAARALELLNFTPLNGKPIRIMYSHRDPSIRKSGAGNIFIK
NLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNDEAAQKAIEKLNGMLL
NDKQVFVGPFLRKQERETATDKTRFNNVFVKNLSELTTEEDLNRIFGEFGTLTSFVVMRD
ADGKSKCFGFINFENADDAARAVESLNGRKVDDKEWYVGKAQKKSEREVELKIRFEQSMK
EAADKYQGANLYVKNLDDSIGDDKLKELFSQFGSITSCKVMRDPNGISRGSGFVAFSTPE
EASRALSEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQMRPMAMAPSVAPRMQMYPPG
GPGLGQQIFYGQAPPAIIPSQPGFGYQQQLVPGMRPGGAPMPNFFVSMLPQGQQAQRPGG
RRAGGVQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDVPMPAVGSGMFSVPYDMGVGPMR
DASPLSQPIPIGALATALANATPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTE
VLHLLESPEALKAKVAEAMEVLRNVQQQQAGNAADQLASLSLGDNLVS
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggtacaagctccgcctcagaatgcgatccctggtgcgaacggtgccggcggc
gccaaccagttcgtgacgacgtcgctgtacgtcggagatcttgaacagaacgtcaccgat
tcgcagctgtacgacctgtttaaccatctgggtcaggtggtttccgttagggtttgcagg
gacttgagcactcggcgatcgctcggttatggctatgtcaactatagcaaccctcaggac
gctgcaagggcattggaactcctgaacttcactcccctgaatggaaagcccattaggatt
atgtattctcatcgtgaccctagtattcgcaaaagtggggctggaaacatttttattaag
aatttggataaggcaattgaccacaaagcattacatgatacattttctgcatttgggaac
attctctcttgcaaggtagcaactgactcctctggccagtcaaaaggctatggatttgtg
caattcgataatgacgaagctgcccaaaaagctatagagaagttgaatggtatgctattg
aatgataagcaagtttttgttggacccttcctccgcaagcaggaaagagaaactgccact
gacaagacaagattcaacaatgtttttgtaaagaatctctctgaattgacaactgaagaa
gatttgaacagaatttttggagaatttggaactctcaccagttttgtggtgatgagggat
gcagatgggaaatctaagtgctttggttttatcaactttgagaatgcagatgatgccgcc
agggccgtagagtctcttaatgggaggaaagttgatgataaggagtggtatgttgggaag
gcacagaagaagtctgaaagggaagttgagttaaaaattcgatttgaacagagtatgaaa
gaggctgcagacaaatatcaaggggcaaacttgtatgttaaaaatttagatgacagcatt
ggtgatgataaacttaaggagcttttctctcagtttggttccattacttcatgcaaggtt
atgcgagaccctaatggaataagtagaggatctgggtttgttgcattctctactcctgaa
gaggcatctagagctctatcggagatgaatggcaaaatggttgtgagcaaacctttgtat
gttgcacttgcacaacgaaaagaggatagaagagctaggttgcaggctcaattttctcaa
atgcggccaatggcaatggcaccttcagttgctcctcgtatgcaaatgtacccccccggt
ggtccaggccttggacaacaaatattctatggccaggcccctcctgctatcattccttcc
cagcctggatttgggtatcagcagcaacttgttcctggtatgagacctggtggggctcca
atgccaaatttctttgtgtcaatgcttccacagggacagcaagcgcagcgccctggtggc
aggcgtgctgggggtgtgcagcaaacccagcagccagttccactaatgcagcagcagatg
cttccaagggggcgagtctaccgttatcctcctgggcgtggcctgcctgatgttcccatg
cctgctgttggtagcggcatgttttctgttccatatgatatgggtgttgggccgatgcgt
gatgcatcaccactgtctcagccaatccctataggggctttggctactgcccttgcaaat
gctactccagagcagcagagaacgatgctgggtgagaatctctatccacttgtggaacag
ctggagcctgacaatgcagctaaggtaactggtatgcttctggagatggatcagactgag
gtgttgcatttgcttgagtcaccagaagctctgaaagcaaaggtggccgaggctatggag
gttctgaggaatgttcagcagcaacaagctggcaatgcagctgatcagttggcctcattg
tcacttggtgacaaccttgtttcctaa
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