Quercus lobata (valley oak): 115968088
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Entry
115968088 CDS
T07350
Name
(RefSeq) protein CHROMATIN REMODELING 35-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115968088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115968088
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
115968088
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_16
Motif
Other DBs
NCBI-GeneID:
115968088
NCBI-ProteinID:
XP_030943154
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Position
11:45289541..45297104
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AA seq
933 aa
AA seq
DB search
MEPAIDILPSNHATPIVQPVSRTGFYTIEYKRRKLSSNGKDYGRTVFSTSKHDDSEQKKP
KVSPQVIDYSDPFAIPNLLESIDCGKYGSVTKDIKALIARKMQTLNPYFAKYPALSNTFL
EAEKNQSKEASKEATRLPDNHVIDLEDDCTVNDAKAISLQHVNDAKALSHPVVVIDSDEE
DNGCQNHFVPFQEVVLPKPAGQFLMKDFLDFRAPPSHSARGGGQSHSYPAKGGAQARSYT
AKGGAQQEEPRGELEIKKEKGEYVGIEDEDNHPDAEDDGLEDIWKEMSMALECSKDVAPD
PSSDEEARESEEDCEHSFVLKDDLGYVCRICGVIDRGIETIFEFQYNKVKRSTRTYSSDS
RNGKDRDSTEVVGVKFSEDDLILAEISAHPRHTKQMKPHQMEGFNFLVSNLVGDNPGGCI
LAHAPGSGKTFMIISFMQSFLGKYPHARPLVVLPKGILATWKKEFQTWQVEDIPLYDFYT
VKADNRSQQLEVLNKWVENKSILFLGYKQFSTIVCDNGTSNISASCQEILLKAPSILVLD
EGHTPRNENTDVLQSLAKVQTPRKVVLSGTLYQNHVKEVFNIVNLVRPKFLRLETSRSVV
KRIMSRVDIPGARKQFKAGADAAFYDSVEHTLQKDKDFRRKVAVIQDLREMTGKILHYYK
GDFLDELPGLVDFTVVLNLSSRQKHEVQKLKKLARKFKISSVGSAVYLHPKLNTLSENHA
TADHVVDEMIEKLDVRDGVKAKFFLNILSLCESAGEKLLVFSQYLLPLKFLERLTVQMKG
WILGKEIFVISGESSSDHREWSMERFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVH
LNPSVTRQAIGRAFRPGQKKKVFAYRLVAADSPEEEDHSTCFKKELISKMWFEWNEYCGY
RDFEVETVGVNECGDDFLESPQLGEDVRVLYKR
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggagccagcaattgatatcttgccgagtaatcacgctactccgattgttcaacctgta
tcaagaactgggttttacacaattgaatataaaagacggaagttgtccagtaatggaaag
gattatggtagaacagtcttctctacaagcaagcatgatgatagtgaacagaagaaacca
aaggtctctccacaagttattgattacagcgatccatttgctatccctaacttgctggaa
agtatagactgtggtaaatatggaagtgttacgaaagatataaaagccctcattgctaga
aagatgcagacgctgaacccgtattttgcgaagtatcctgcactttcaaatacattcttg
gaagcggaaaagaaccagagtaaagaggcttcgaaagaagctactcgtttgcctgataat
catgtcattgatttggaggatgactgtactgtaaatgatgcaaaagcaatatcactacaa
catgtaaatgatgctaaagcattatcacatcctgttgtggtcattgactcagatgaggaa
gacaatggatgtcagaatcattttgttcctttccaggaggttgtcttgccaaaaccagct
ggtcagtttctcatgaaggactttttggacttccgtgctccacctagtcattctgcaaga
ggtggaggtcaatcacatagttaccctgcaaaaggtggagctcaagcacgtagttacacc
gcaaaaggtggagctcaacaagaagaaccaagaggcgaacttgaaattaagaaagaaaaa
ggtgagtatgttggcatagaagatgaagacaatcatcctgacgctgaagatgatgggcta
gaagatatttggaaggagatgtcaatggcattagaatgttcaaaggatgttgctccagat
ccttcatctgatgaagaagcaagagaaagtgaggaggactgtgaacattcttttgtttta
aaggatgatcttggttatgtttgtcgcatttgcggggttattgacagaggtattgagacg
atatttgagttccagtacaataaggtcaaaagaagtactcgaacatacagttctgattct
cggaatggtaaagacagagactcaaccgaggtagttggagttaaattttcagaagatgat
ctgattttagctgaaatctctgcccatccaaggcatacgaagcaaatgaaacctcatcag
atggagggtttcaattttcttgttagcaatttggtgggtgataatcctgggggctgtatc
ttggcccatgctcctggatccggaaagacatttatgataatcagttttatgcaaagtttc
ctgggaaagtatccacatgctagaccactggtcgtgcttccgaaaggaatcttggcaaca
tggaaaaaggagttccagacatggcaagtagaggatattccactgtatgacttttacact
gtcaaagcagataatcgatctcagcaactggaggtgttgaataagtgggtagagaataag
agtatcctatttctagggtacaaacaattctcaactattgtttgtgacaatggaaccagc
aatatctctgcttcgtgtcaagaaatacttcttaaggctccttcgattcttgttctggac
gaaggacacactccaagaaatgagaacactgatgtgttgcagtcccttgcaaaagttcag
acacctagaaaggttgtgctttcaggaaccctctatcaaaatcatgtcaaagaggtgttc
aacatagtcaatcttgttcgaccaaagtttttgcgattggaaacctctcgttctgttgtt
aagcgcatcatgagtagagttgatataccaggtgcaagaaagcagttcaaagcaggtgct
gatgcagcattttatgactcggttgaacacactttacagaaggacaaagattttagaagg
aaagtggctgttatacaagatctgcgcgagatgaccggcaagatccttcactactataaa
ggggacttcctagatgagcttcctggtcttgttgacttcactgtagtactgaatctaagt
tcaagacagaagcatgaagttcagaaattaaagaagttggcgaggaagttcaagataagc
tctgttggaagtgctgtctatcttcacccaaagttgaatactctctcagagaatcatgcc
acagctgatcatgtagtggatgagatgatagagaaattagatgtcagagatggagtgaaa
gctaaattctttcttaatatacttagtttatgtgagtcagctggagagaagctactggtt
ttcagtcagtacctcctacccttaaaatttctggagagattaacggtgcaaatgaagggt
tggattctcggaaaagaaatttttgtgatttcaggtgaatcaagttctgatcatcgtgaa
tggtccatggagcgctttaacaattcccctgatgccaaagtattctttggctcgatcaag
gcatgtggtgagggtatatctttggttggggcatcccgcataataatactggatgttcat
cttaatccgtctgtgacccgccaagcaataggtcgtgcatttcgcccaggtcaaaagaag
aaagtgtttgcatatagattggtagctgctgattcacctgaggaggaagatcacagcact
tgcttcaagaaggaattaatttcaaagatgtggttcgaatggaatgagtattgtggttat
cgggattttgaagtggagactgttggtgtgaatgagtgcggtgatgacttcttggaaagt
ccacagttaggggaagatgtaagggttctgtacaaaaggtag
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