Quercus lobata (valley oak): 115968364
Help
Entry
115968364 CDS
T07350
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
115968364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
qlo03009
]
115968364
Ribosome biogenesis [BR:
qlo03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
115968364
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Utp21
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
Beta-prop_WDR5
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
ASA1
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_VPS8
Beta-prop_WDR75_1st
Beta-prop_HPS5
ANAPC4_WD40
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_NOL10_N
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_TEP1_C
PAC11
DSE1_N
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_ACSF4
CFAP251_N
PEP5_VPS11_N
TRM82_WD
Beta-prop_SCAP
WD40_like
WD40_RFWD3
NBCH_WD40
Beta-prop_WDR75_2nd
Tricorn_2nd
Beta-prop_LRRK2
Motif
Other DBs
NCBI-GeneID:
115968364
NCBI-ProteinID:
XP_030943608
UniProt:
A0A7N2MUX2
LinkDB
All DBs
Position
11:complement(8627094..8640016)
Genome browser
AA seq
908 aa
AA seq
DB search
MGIFEPYRAIGYITSGVPFSVQRLGTETFVTVSVGKAFQVYNCAKLTLVLVGPQLGKKIR
ALASYRDYTFAAYGNEIAVVRRAHQVATWSAHNAKVNSLLLFGEHVLSVDVEGNMFIWAF
KGIDQPSAPVGHIMLDDKFSPSCIVHPDTYLNKVLLGSQEGSLQLWNISTKKKIYEFKGW
NSSISSCVSSPALDVIAVGCADGKIHVLNIRYDEELVTFSHSTRGAVTALSFSTDGQPLL
ASGGSSGVISIWNLEKRRLQSVIREAHDCSIISLHFFANEPVLMSSSADNSIKMWIFDTS
DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVSKR
AKKLRVKEEEIKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILNPC
PENPTPVKACAISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERRSCAHDGEVIGV
ACDSTNTLMISAGYSGDIKVWDFKGRELKSKWEIGCSVVKIVYHRPNGLLATVADDLIIC
LFDVVALRMVRKFEGHTDRITDLCFSEDGKWLLSSSMDGSLRIWDVILARQIDALQVDVS
ITALCLSPNMDVLATTHVDQNGVYLWVNQAMFSGASNVDSYASGKEVVSVKLPSVSSMES
SQVEDSDKAVVNHLESKEASFTTPDQQIPDLVTLSLLPKSQWQSLINLDIIKVRNKPIEP
PKKPEKAPFFLPSVPSLSGEILFNPSKTANEEKDTKVNEVENKRRESDMPPSQFLQHLQS
SMEMKNFSAFTDYIKGLSPSTLDMELRMLQIIDDDDDQQEPDERPELFSIELLLDYFIHE
ISCRNNFEFIQAVIRLFLKIHGETIRRQSRLQDKARKLLDIQSTVWQGVDKLFQSARCMV
TFLSNSQF
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgggaatattcgaaccgtacagagcgattggatacataactagcggcgtccccttctcc
gttcaacgtttaggcaccgaaaccttcgtcaccgtcagcgtcggcaaagcttttcaagtc
tacaactgcgccaagcttactctggttcttgtcggtcctcaattgggcaagaagatccgt
gctcttgcttcgtatcgcgactacacatttgcggcatacgggaatgagattgctgttgtt
aggcgtgctcaccaggtagcaacttggagtgcgcataacgctaaagtcaattcgttgctg
ttgtttggagaacatgtccttagtgttgatgtggaaggtaacatgttcatatgggcattt
aaaggaattgaccagccttctgctcctgttggacacatcatgctagatgataaatttagt
cctagctgtatagtgcatccagacacctacttgaataaggttcttcttgggagccaggaa
ggttctttgcagctttggaacattagcacaaagaaaaaaatttatgagttcaagggatgg
aactcgtctatatctagttgtgtttcatcaccagcacttgatgtcattgcagtcggctgt
gctgatggaaagattcatgttctcaacattcgctatgatgaagagttggttaccttctcg
cattctacacggggtgctgttacagccttatcttttagcacagatggacagcctcttcta
gcatctggaggctcatctggtgtcattagcatatggaatcttgagaagagaaggctccaa
tcagtcatacgagaggctcatgattgttcgataatttcactgcatttttttgctaatgag
cctgtcttaatgagttcatctgcagacaattctattaaaatgtggatttttgacacaagt
gatggagatccccgtcttctgcgctttcgaagtggacatagtgctcctccactttgcata
agattttatgcaaatgggaggcacattctatcagctgggcaggatcgtgcctttcgcctt
ttctctgtaattcaggatcagcaaagtagggagctttctcaacgtcatgtatctaagcga
gccaagaaactgagggtgaaggaagaagagataaaattgaagcctgttattgcattcgat
tgtgctgaaatcagagagcgggattggtgcaatgtggtaacatgtcatatggatactgct
caggcttatgtgtggagacttcaaaactttgttctcggtgaacatattctaaatccatgt
ccagaaaatccaacacctgttaaggcctgtgcaatcagtgcatgtggcaattttgctgtg
ttagggacagcaggtggttggattgagcgattcaaccttcaatcaggaatcagccgtggc
agctacctggacatgtcagaaagaagaagctgtgcccatgatggggaagtgattggagtt
gcttgtgattcaacaaataccctcatgataagtgcaggatatagtggagatataaaggta
tgggatttcaagggacgcgaactaaaatccaaatgggaaattggttgttctgttgttaag
attgtttaccatcgccctaatggtctattggctactgtggcagatgatttaattatctgc
ttgtttgatgttgtggcgttaagaatggttcgtaaatttgaaggtcatacggatcgcatt
acagatttgtgtttcagtgaggatgggaaatggctcttgtcatccagtatggatggaagt
cttcgaatctgggatgttatcttagcaagacagatagatgcactacaggttgatgtgtct
atcacagcgttgtgtctgtcacccaatatggatgttttagcaactacccatgttgatcaa
aatggggtatacctatgggtaaatcaggcaatgttttctggagcttcaaatgttgattct
tatgcaagtggaaaagaagttgtgagcgttaagctgccatctgtctcttcgatggaaagt
tctcaagttgaggattctgataaggccgttgtgaaccacttagagtccaaggaagcttct
tttactactccagatcagcaaatcccggatctagttactctttcattactgccaaagagt
cagtggcagagtttgatcaatctagatatcataaaggttcgtaataaaccaatagagcct
ccaaagaaacccgaaaaggctcctttcttcttgccttctgttccatctctctcaggagaa
atattgtttaaccctagtaagacagcgaatgaggagaaggatactaaggttaatgaggtg
gaaaacaagaggagggaatctgatatgccaccatcccaatttttgcaacatcttcagtcc
tctatggagatgaaaaatttttcagcatttaccgattatattaaaggtttatctccatca
actttggacatggaacttcgaatgcttcaaattatagacgatgatgatgatcagcaagaa
ccagatgaaagaccagagttgttttcaatagaactacttttggattactttatacatgag
atttcctgcagaaacaattttgagttcattcaagctgtcatcaggttgtttctgaagatt
catggtgaaacaattaggcgtcagtcaagattacaggataaggcaaggaagcttcttgat
attcaaagcacagtatggcaaggagtagataaattgttccaaagtgctagatgtatggtc
acttttcttagcaattcacaattttag
DBGET
integrated database retrieval system
