KEGG   Quercus lobata (valley oak): 115968735
Entry
115968735         CDS       T07350                                 
Name
(RefSeq) protein transport protein SEC13 homolog B
  KO
K14004  protein transport protein SEC13
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03013  Nucleocytoplasmic transport
qlo04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    115968735
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    115968735
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:qlo03019]
    115968735
   04131 Membrane trafficking [BR:qlo04131]
    115968735
Messenger RNA biogenesis [BR:qlo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     115968735
Membrane trafficking [BR:qlo04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    115968735
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    115968735
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    115968735
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_IFT122_1st Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR35_TULP_N Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd WDR55 Beta-prop_RIG_2nd Beta-prop_Vps41 WD40_Gbeta ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st DSE1_N Beta-prop_WDR41 Beta-prop_WDR36-Utp21_2nd Beta-prop_HPS5 Beta-prop_SCAP Beta-prop_NOL10_N RMC1_N
Other DBs
NCBI-GeneID: 115968735
NCBI-ProteinID: XP_030944090
UniProt: A0A7N2RCU4
LinkDB
Position
11:5244715..5246689
AA seq 301 aa
MPSQKIETGHQDVVHDVAMDYYGKRVATASSDHSIKITGVSNTASQQLATLTGHQGPVWQ
VAWAHPKFGSLLASCSYDGQVIIWKEGNPNEWTQAHVFNDHKSSVNSVAWAPHELGLCLA
CGSSDGNISVFTARPDGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGLLDPVQKLCS
GGCDNTVKVWKLYNGTWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW
TVAKEGDQWEGKVLNDFKTPVWRVSWSLTGNILAVADGNNSVTLWKEAVDGEWQQVTTVE
P
NT seq 906 nt   +upstreamnt  +downstreamnt
atgccttcgcaaaagattgaaactggtcaccaagatgtggtccatgatgtagccatggat
tactatggtaagcgtgttgccacagcctcatcagaccactccattaagataactggggtg
agcaatacggcctctcagcagcttgcaacgttaactggtcaccaaggacctgtttggcag
gtggcatgggctcacccaaaattcgggtctttacttgcttcatgttcttatgatgggcaa
gtgataatatggaaggagggtaatccgaatgagtggactcaagcccatgtcttcaatgac
cacaagtcatctgtcaattctgttgcttgggctcctcatgaattgggactttgtttggca
tgtggttcctctgatgggaatatctcagttttcactgcaagaccggatggtggttgggac
acctcaaggattgaccaggctcacccagttggtgtgacatctgtttcatgggctccctca
acagctcccggggctcttgttggttctggcttgcttgatcctgttcagaagctctgctcg
ggtggttgtgataatactgtgaaggtgtggaagctctataatgggacatggaagatggat
tgctttccagctcttcagatgcatacagattgggttcgtgatgttgcctgggcacctaac
ttgggacttccgaaatctacaattgcaagtgcctcacaggatggcaaagtcatcatatgg
actgtggccaaggagggggatcaatgggaaggcaaggttctgaatgatttcaagactcct
gtttggagggtctcctggtcactaacaggaaacatattggctgtggctgatggaaacaac
agtgtgacattgtggaaggaagcagtagatggggagtggcaacaggtgactacagttgag
ccttag

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