KEGG   Quercus lobata (valley oak): 115968876
Entry
115968876         CDS       T07350                                 
Name
(RefSeq) WD-40 repeat-containing protein MSI3-like
  KO
K10752  histone-binding protein RBBP4
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03082  ATP-dependent chromatin remodeling
qlo03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    115968876
   03083 Polycomb repressive complex
    115968876
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:qlo03036]
    115968876
Chromosome and associated proteins [BR:qlo03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     115968876
  Histone modification proteins
   HAT complexes
    HATB complex
     115968876
   HDAC complexes
    Sin3A-HDAC complex
     115968876
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     115968876
    PRC2.2
     115968876
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     115968876
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    115968876
  Chromatin remodeling factors
   NuRD complex
    115968876
   NuRF complex
    115968876
   NuRF complex (fruit fly)
    115968876
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 CAF1C_H4-bd WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_TEP1_2nd EIF3I WD_LRWD1 Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd Beta-prop_EML WD40_RFWD3 Beta-prop_HPS5 Beta-prop_WDR90_POC16_2nd Beta-prop_SPT8 ANAPC4_WD40 MIOS_WD40 Beta-prop_NUP159_NUP214 Beta-prop_RIG_1st
Other DBs
NCBI-GeneID: 115968876
NCBI-ProteinID: XP_030944267
UniProt: A0A7N2N840
LinkDB
Position
11:complement(50249370..50253891)
AA seq 408 aa
MAEQQREDEPSLVQLEEEYTVWKKNSPFLYDLIISHPIEWPSLTVQWVPQPPTHTSDSSF
AVQKLVFGTHTSSGVPNFLMVADAHLPSKASEANINGDAENPLTPKVEVTQKIRVDGEVN
RARCMPQNPVVVGAKTSGCDVYVFDCSKQLEKQQGGDCEPDLRLRGHDMEGYGLSWSPCK
EGYLLSGSHDCKICMWDVSAAAQDKVLDALHVYKAHEMLVEDVSWHSKNENLFGSVGDDC
HLMIWDLRTNQPQQSVKAHEREVNYLSFNPYNEWILATASSDTTIGLFDTRKLSVPLHVL
SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEGDAEDGPPELLFSHGGH
KAKISDFSWNKYQPWVIASVGDDNTVQVWQMAESIYREDDDDVQDADD
NT seq 1227 nt   +upstreamnt  +downstreamnt
atggcggaacaacaacgagaagacgagccgagtctggttcaattagaggaagagtacaca
gtgtggaagaagaactcgccgttcctctacgatttgatcatatcccaccctatcgaatgg
ccgtctctcactgtccaatgggtcccacaaccgcccacccacacctcggattcatctttc
gccgttcaaaagctcgtcttcgggacccacacttcctcgggtgtccctaattttctcatg
gtcgccgatgctcaccttcctagcaaagcttctgaagccaacatcaatggcgatgctgaa
aaccccctcacacctaaggtggaggtgacgcagaagatacgtgttgatggagaagtgaat
agggcacggtgtatgccacagaacccggtagttgtgggtgcaaagacaagtgggtgtgat
gtgtatgtatttgattgtagcaagcaattggagaagcaacaagggggtgactgtgagcct
gatttgaggttaaggggtcatgatatggaagggtatgggttgtcttggagtccctgtaag
gagggatacctcttgagtggctcgcatgactgtaagatatgtatgtgggatgtgtctgct
gcggctcaagataaggtgcttgatgcattgcatgtttacaaggctcatgaaatgttggtg
gaagatgtatcctggcattcaaagaatgaaaatttgtttgggtctgtgggggacgattgt
catttgatgatttgggacttgcgcacaaaccaaccccaacaatctgtcaaagctcacgag
agagaggtgaactatctttctttcaatccttacaatgaatggatattggctacagcatct
tcagataccaccattggtctctttgatacaaggaagctaagcgtgccactgcatgtttta
agcagtcacacggaggaagtcttccaggtagaatgggaccctaatcatgaaaccgtgctg
gcatcatctgctgatgatagaaggttgatggtttgggatcttaacaggattggagatgag
caattagagggagatgctgaagatggtcctccagagcttctattttcccacgggggtcac
aaggcaaagatatcagatttctcatggaataagtatcaaccatgggtcattgcgagtgta
ggcgatgacaacactgttcaggtctggcaaatggctgagagtatatatcgagaagacgat
gatgacgtgcaagatgctgatgactaa

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