Quercus lobata (valley oak): 115969535
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Entry
115969535 CDS
T07350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115969535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115969535
03041 Spliceosome [BR:
qlo03041
]
115969535
03009 Ribosome biogenesis [BR:
qlo03009
]
115969535
03016 Transfer RNA biogenesis [BR:
qlo03016
]
115969535
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115969535
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
115969535
Spliceosome [BR:
qlo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
115969535
Complex C
U4/U6.U5 tri-SnRNP related factors
115969535
Ribosome biogenesis [BR:
qlo03009
]
Eukaryotic type
Pre-60S particles
Helicases
115969535
Transfer RNA biogenesis [BR:
qlo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
115969535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
115969535
NCBI-ProteinID:
XP_030945065
LinkDB
All DBs
Position
11:complement(8820750..8834978)
Genome browser
AA seq
1033 aa
AA seq
DB search
MEESPTLGKRKEPETEQSTVTETPSQGSTPKRQREPEDSELLVTPIQQSTPTGKSEPDDL
EVTRTPNQESLRNQSNLTRTCIHEVAVPSGYTPTKVESVHGTLSNPMYNGKMAKTYPFTL
DPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFREKQRVLYTSPLKALSNQKYR
ELSQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSELLKEVAWVIFDEIHYMKDR
ERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNIHKQPCHVVYTDFRPTPLQHYV
FPVGGNGLYLVVDENEQFREDNFLKLQDTFSKQKLGDINKSVNGRASGRIAKGGNASGGS
DISKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNSQEEKDTVEEVFRNAIQCLN
EEDRNLPAIELMLPLLQRGIAVHHSGLLPVIKELVEILFQEGLVKALFATETFAMGLNMP
AKTVVFTAVKKWDGDSHRLIGSGEYIQMSGRAGRRGKDERGICIIMIDEQMEMNALKDMV
LGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQFQYEKALPDIGNKVSKLEQ
EATMLDASGEAEVADYHKLKLDIAQLEKKLMGEITRPERVLYNLRPGRLVKIREGGTDWG
WGVVVNVVKRPSTGVGSLPSRGGGYIVDTLLHCSPGSSENSSRPKPCPPRPGEKGEMHVV
PVQLPLIAALSKLMISIPSDLRPLEARQSILLALQELNTRFPQGLPKLNPVKDMGIEDSE
IVELVNEIEELERKLYAHPLHKSQDVHQMRSFQRKAEVNHEIQQLKSKMRDSQLKKFRDE
LKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQIAALSS
CFIPGDKSSEQIQLRTELGRPLQQLQESARRIAEIQHECKLDVNVDEYVESTVRPYLMDV
IYCWSKGANFEEVIQMTDIFEGSIIRSARRLDEFLNQLRNAAQAVGEANLENKFAAASES
LRRGIMFANSLYL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatctccgacgcttggaaaacgaaaagaacctgaaactgaacaatctacagtc
accgaaacccctagtcagggatctactccaaaaagacaaagagaacctgaagattcagag
cttcttgtaactccaattcaacaatctaccccaactggaaaaagtgaacctgatgattta
gaggtgactagaacccccaatcaagaatcccttcgaaatcaatccaatctgacgcgcaca
tgcatccatgaggttgcagtgccaagtgggtatactccaaccaaggttgaatctgttcat
ggaaccctctctaatccaatgtataatggcaagatggcaaagacatacccatttacgctt
gacccatttcagcgggtatctgtggcatgcttagaacggaatgagtcggttttggtgtca
gcacatacttcggcaggtaaaactgcagttgctgagtatgctattgcaatggcttttaga
gagaagcagagggttctttatacttcgccattgaaagctttgagcaatcagaagtacaga
gagcttagtcaggaatttaaagatgtgggattgatgacaggtgatgttactctgtcacct
aatgctagttgtttggtcatgacaactgagattctgaggggaatgctttataggggttca
gagcttttgaaggaagttgcttgggtcatctttgatgaaattcattatatgaaggatcgt
gaaagaggggttgtttgggaagagagcattatatttttgccaccagctattaaaatggta
tttctttcagcgacaatgtcgaatgccactgagtttgctgagtggatatgtaatattcac
aaacagccatgtcatgtggtctacacagatttccgaccaactcctctgcagcattatgtt
tttcccgtgggtgggaatggattgtatcttgtggttgatgagaatgaacagttcagggag
gacaattttctgaagttgcaggatactttctcaaagcagaagctaggtgatattaacaag
agtgttaatggaagagcaagtgggagaattgcaaaaggtgggaatgcttctggtggttct
gacatatccaaaattgtgaagatgattatggaacgaaaattccagccagtaatcatcttc
agcttcagtagaagagaatgtgaacaacatgcgatgtccatgtccaagcttgattttaat
agccaagaggagaaggatactgtggaagaggtttttcgaaatgcaatacaatgcttgaat
gaggaggacagaaatttacctgccattgagttaatgttgccactacttcagcgaggtatt
gctgttcatcattctggccttcttcctgttatcaaggaattggttgagattctttttcag
gaaggccttgtaaaggccctttttgccacagaaacatttgccatgggtttaaacatgccc
gcaaaaactgttgttttcacagctgtcaaaaagtgggatggtgatagtcatcgtttaatt
ggatctggtgaatatatacagatgagtggacgggctgggcgtcgtggcaaagatgagcgt
ggtatctgtattattatgattgatgagcagatggagatgaatgctctcaaggacatggtt
ttgggtaaacctgctccattagttagtactttcaggctgagctactactcaattttgaac
ttaatgagtcgtgccgaaggccagtttactgctgaacatgtaataaagaattcatttcat
caatttcagtatgaaaaggccttacctgatatagggaacaaggtttccaagctggagcag
gaagctaccatgcttgatgcttccggagaggctgaagttgctgattatcataagctaaaa
ctggatatagcccaacttgagaagaagttgatgggagaaataactaggcctgaaagggtc
ctctacaatcttcgtcctggtcgactggtcaagataagggaaggtggaacagattggggt
tggggagttgtggtcaatgttgttaaaaggccatccacaggggtaggttcattgccttca
cgtgggggtggttatatagttgatactttacttcattgctctcctggttcaagtgagaat
agttcacggccaaaaccgtgcccgccccgccctggagaaaagggtgaaatgcatgtggtc
cctgttcagttgcccctaattgctgctctaagcaaactgatgatatctataccttctgat
ctccggccactggaagccaggcaaagtatattgcttgctttacaggagctgaacactcgc
tttccacaaggccttccaaagcttaatcctgtaaaggatatgggcattgaagattcagaa
attgttgagttggtgaacgaaattgaggaacttgaacggaagttatatgctcatccacta
cacaagtctcaagacgtgcaccagatgagatcttttcagaggaaagctgaggtgaaccat
gaaattcaacaacttaagtcgaaaatgcgtgattcccagcttaaaaaattccgtgatgaa
cttaagaaccggtcacgggtcttgaaaaagcttggtcatattgatgctgatggtgttgtc
cagttgaagggtcgggcagcctgcttgatagacacaggcgatgagctccttgtcactgaa
ctgatgtttaatggtacattcaatgatcttgatcatcaccaaattgctgctctttcaagt
tgttttataccaggagataaatcaagtgaacagatacaattgcgaacagagcttgggaga
ccattacaacaactccaagaaagtgcaagaagaatagcggagattcaacatgaatgcaag
ctggatgtaaatgtggatgagtatgtggaatccacagtaaggccatacttgatggatgtg
atttactgttggtcaaagggagcaaattttgaagaggttatacaaatgactgatattttt
gagggtagtattattagaagtgctagaaggcttgatgagtttttgaatcagttgcgtaat
gctgcccaagctgttggtgaagctaatttagagaacaagtttgcagcagctagcgaaagc
cttcgccggggtataatgtttgcaaattccctgtatttgtaa
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integrated database retrieval system
