Quercus lobata (valley oak): 115969634
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Entry
115969634 CDS
T07350
Name
(RefSeq) protein CHROMATIN REMODELING 35-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115969634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115969634
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
115969634
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
115969634
NCBI-ProteinID:
XP_030945189
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All DBs
Position
11:45321548..45330808
Genome browser
AA seq
1177 aa
AA seq
DB search
MDPDIEYPSPSSELHSKGSKRMKVSSEVENYVSRSYPVTKRDKFKQKKQKSTSRIVNDSE
PFASPNLVQMLDTNMFGSVTKEIEALCARRSRLLNHVIAKNPMLPFTFSDVPKNQCKEPM
NLVIQKATHLALENIIDLEDDCMLIDALSVVPPVIDLSSDDEDDEHGRHSNICPKVALEP
SVKDSIDILKSEDVKGQVEIMIGEADIRRDKGCNFVVEDDVEVEEDSHWSFQEKESNYEP
NTIDHSLEDIESKDVQNAADEVDIGIDKDKYDGSGDDMEIEEDNHQIYQKEEHNLQTYAE
DNGLTNICKMTVALECSEVSAFEDILKSKAVREKVDGIIGKVDTRIIKDGNFGAEDVLVE
EESRQLIQEKESNYEINTVDDRLDDKQIKAPRKRDILKSKAEREKVDSIIGKVDMRIIKD
GNFGAEDVLVEEESHQLFQEKESNYEINTVDDRLDDKQIKAPSERVRNVADEINIRTDKD
KYYGSGEDMVIEEDNYHSHQEEEYNLQSNAKDDGLANMWNEMAVALECSKDIGVDPSTDE
HTREGGEECDHSFFLKDDLGYVCRICGVVDKAIESIFEFQYSKGKRTTRTYMRDSQSNNS
IGSDKSLPLGVKSSDDDLMANEIFAHPRHSKQMKPHQVEGFNFLCSNLLSNNPGGCILAH
APGSGKTFLVISFIQSFLARYPHARPLVILPKGILATWKKEFQIWQVEDIPLLDFYSSKA
ESRSQQLDVLRQWVAQKSILFLGYKQFSAIVCDRGTSKVATDCQDILLKVPSILILDEGH
TPRNENTDMVQSLSRIQTPLKVILSGTLYQNHVKEVFNILNLVRPKFLRLQASQDIVRRI
MSRVQLTSVRKNLKLGMDLAFFDLVEHTLQQKDENSKRKATVIQDLREMTRQVLHYYKGD
FLDELPGLVDFNVMLNLSAIQKIEVENLRRLDYFRRNSLGSLVYMHPQLKYFSEKYPSTG
DKSLVDDEKIDEMLENMNVREGVKVKFFLNMLGLCESAGEKLLVFSQYILPLKLLERLSM
KVKGWRPQKEIFMITGDSNSEYRERSMERFNISGDAKVFFGSIRACGEGISLVGASRILI
LDVHLNPSVSRQAIGRAFRPGQKRKVYTYRLIAADSPEEEDHNTCFRKESISKMWFEWNE
NCGHSEFEMKTCDVKDCGDPFLESLSLQEDIKLLSQR
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggatccagatattgaatacccaagtccatcttcagagttgcattccaaggggtccaaa
agaatgaaagttagttctgaagtagaaaattatgttagcagatcttatccagtgactaag
cgtgataagttcaaacagaagaaacaaaagtccacatcaagaattgttaatgattcagaa
ccatttgccagtcccaatttggtgcaaatgttggatacaaatatgtttggaagtgtgaca
aaagaaatagaggccctttgtgcacgaaggtcacgattgctgaaccatgttattgcaaaa
aatcctatgcttcctttcacattttcagatgtgccaaagaaccagtgtaaagagcctatg
aacctggtgattcagaaggccactcatcttgcacttgaaaatatcattgatttagaggat
gactgtatgttaattgatgccctttcagtagttccacctgtaatagatcttagttcagat
gatgaagatgatgaacatgggaggcattctaatatatgtccgaaggttgcgttggagcct
tccgtgaaggattccattgatattctaaagagcgaagatgtaaaggggcaagtagaaatc
atgattggcgaagctgatattaggagggataaaggttgtaattttgttgtggaagatgat
gtagaggttgaggaagacagtcactggtcatttcaggaaaaagaaagtaattatgaacct
aatactatagatcatagcctggaagatatagaaagcaaagatgtacaaaatgcagctgat
gaagttgatatcgggatagataaagataaatatgatggctcaggagatgatatggagatc
gaggaagacaatcaccaaatttatcagaaagaggaacataatcttcaaacatatgctgaa
gacaatggtctgacaaatatatgcaagatgacggttgcgttagaatgttctgaggtatct
gcgtttgaggatattctaaagagcaaggctgtaagggaaaaagtggatggcataattggt
aaagttgatacgaggataattaaagatgggaactttggtgcagaagatgtactagttgag
gaagagagtcgccagttaattcaggagaaagaaagtaattatgaaattaatactgtagat
gataggctggatgataagcaaatcaaagctccaaggaaaagggatattctaaagagcaag
gctgaaagggaaaaagtggatagtataattggtaaagttgatatgaggataattaaagat
gggaactttggtgcagaagatgtactagttgaggaagagagtcaccagttatttcaggag
aaagaaagtaattatgaaattaatactgtagatgataggctggatgataagcaaatcaaa
gctccaagtgaaagggtaagaaatgtggctgatgaaatcaatatcaggacagataaagat
aaatattatggttcaggagaggatatggtgattgaggaagacaattaccactctcatcag
gaagaggaatataatcttcaatcaaatgctaaagacgatggtctggctaatatgtggaat
gagatggcagtcgcattagaatgttccaaggatattggtgttgatccttcaactgatgaa
cacacaagagaaggtggggaagaatgtgatcattcttttttcttgaaggacgatcttggt
tatgtttgtcgcatttgtggagttgttgacaaagcaatagaatccatatttgaattccaa
tatagtaagggcaaaaggactacacgaacttacatgcgtgattctcagagtaacaacagc
atagggtcagataagagtttaccacttggagttaaatcttctgatgatgatctgatggca
aatgagatttttgctcatcctaggcatagcaagcaaatgaaaccccatcaagtggagggc
ttcaattttctttgtagcaacctgctatctaataatccaggaggctgcattttggcccat
gctccaggttctggaaagacatttttggttataagtttcattcagagtttcctagccagg
tatccccatgctaggccactggttattctacctaaaggcatcctggctacctggaagaaa
gagttccaaatatggcaagttgaggacattccgttgcttgatttttacagttcaaaagca
gagagtcgatctcagcagctggatgtattgagacaatgggtagctcagaagagcatccta
tttcttggatataagcagttctctgccattgtttgtgaccgtggaactagcaaggtggca
actgattgtcaggatattcttctgaaggtcccatccattcttatcttagatgaaggtcat
actccaaggaatgagaacactgatatggttcagtccctttcaagaatccaaacacctctc
aaagtcattctttcgggtactctttatcaaaatcatgtgaaagaggtattcaacattttg
aatcttgttcgtcctaagtttcttagattgcaagcttcccaagatattgttaggcgcatt
atgagcagagtacagttaacaagcgtgaggaagaatttaaaacttggcatggacttagct
ttctttgacttagtggagcacacactgcaacagaaggatgaaaactccaagaggaaagcg
actgtcatacaagacctccgtgagatgactcgccaagtcctacattactacaaaggagat
ttcctggatgagcttcctggacttgttgatttcaacgtaatgctcaatctcagtgcaata
cagaaaattgaagttgaaaatttgaggaggttggattacttcagaagaaattctttgggt
agtcttgtctatatgcatccacagttgaaatatttttcggagaaatatccatcaactgga
gacaaaagtttagttgatgatgagaagatagatgaaatgttagaaaatatgaatgtgaga
gagggagtaaaagtgaagttctttcttaatatgttgggcctatgtgaatcggctggtgag
aagctgctggtttttagccaatacatattgcccctgaaactcttggagagattatcaatg
aaggtaaaaggttggagacctcaaaaagaaatttttatgataactggtgattcaaattct
gagtacagggaacggtccatggaacgctttaatatctctggtgatgcaaaagtcttcttt
ggttcaatcagagcttgtggggaaggtatatctctagtgggggcttctcgcatcctaatt
ttggatgttcatcttaatccatcagtaagccgccaagcaataggccgtgcattccgacca
ggtcaaaagagaaaagtatacacttatagattgattgctgctgattcacctgaagaggaa
gatcacaacacatgcttcagaaaggagtcgatttcaaagatgtggtttgagtggaatgag
aactgtggacatagcgaatttgaaatgaagacttgtgatgtgaaggattgtggtgatcca
ttcttggaaagtctgtcattgcaggaagatataaagcttttgtctcaaaggtaa
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