Quercus lobata (valley oak): 115969910
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Entry
115969910 CDS
T07350
Name
(RefSeq) cryptochrome-1 isoform X1
KO
K12118
cryptochrome 1
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
115969910
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Motif
Pfam:
FAD_binding_7
Cryptochrome_C
DNA_photolyase
Motif
Other DBs
NCBI-GeneID:
115969910
NCBI-ProteinID:
XP_030945408
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Position
12:36835158..36843140
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AA seq
681 aa
AA seq
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MSGGGCSIVWFRRDLRLEDNPALQAGVRAGAVVAVFIWAPEEEGHYYPGRVSRWWLNHSL
AHLDSSLRSLGTSLITKRSTDTISSLLEVVKSTGASQLFFNHLYDPLSLVRDHRAKEVLT
AQGIAVRSFNADLLYEPWDVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPMRIVSGDV
SRCPSDALVFEDESEKGSNALLARAWSPGWSNADKTLTTFINGPLIEYSKNRRKADSNTT
SLLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNQAGEESVNLFLKSIGLREYSRYFCFNH
PYSHERPLLGHLKYFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFD
PHGEYVRRWLPELARIPTEWIHHPWNAPEPVLQAAGIELGSNYPLPIVGIDAAKARLQEA
LSETWQQEAASRAVIENGTEEGLGDSSESTPIAFPQDIQMAENHEPVRNNPPTTIRRYED
QMVPSMTSSLVRVEEEEPSLDIQNLAADSRAEVPTDGHVNQEATRNTLNPAVVQNVHSHN
LPQFNTPIVLRNAAEDSTAESSSSIRRERDGGVVPVWSPSTSSYSEQFVGDENGIGTSSS
YLQRHPQSHQIVNWRRLSQTG
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtggtgggtgtagcatagtatggtttagaagagatctgagactagaagacaac
ccagctttacaagctggagtgagagcaggtgctgtggttgctgttttcatatgggcacct
gaagaggaaggccactactaccctggaagagtttcaaggtggtggcttaatcacagtttg
gctcaccttgattcctctttgagaagccttggcacttctctcatcaccaaaagatccact
gacactatttcttctctacttgaggttgttaagtccaccggtgctagtcaactcttcttc
aaccacttatatgatcctttgtcacttgttagggatcaccgtgcaaaggaggttttaaca
gctcaaggcatagctgttcgttccttcaatgcggatttgctctatgaaccttgggatgtt
aatgatgcccatggccgcccattcacaacttttgctgccttttgggaaagatgcctcagc
atgccttatgacccggagtctccacttcttccacccatgaggatagtttcaggtgatgta
tcaaggtgcccttctgatgcattagtgtttgaggatgaatcagagaagggaagcaatgca
ctccttgctcgagcatggtcacctgggtggagcaatgctgataagactctgactacattc
atcaatggaccattaatagagtattctaaaaatcgcagaaaagctgatagcaatacaacc
tcacttctctctccccacttgcattttggggaggtgagtgtgagaaaagtatttcatctt
gtccgtatcaagcaggttctgtgggccaatgaaggcaaccaggctggggaagagagtgtc
aacttgtttctgaaatctattggtcttagagaatattctaggtacttttgttttaaccat
ccatatagtcacgaaaggcctcttcttgggcaccttaagtacttcccttgggtcgtgaat
gaaggttattttaaggcatggagacaaggtagaactggttatccattggtggatgctggc
atgagagagttatgggccactggctggctgcatgatcgaatacgagtagtggtttctagt
ttttttgtgaaggttctgcaacttccatggagatggggaatgaagtatttctgggataca
ctcttagatgcagatcttgagagtgatgctcttggttggcagtatatatctgggactctt
cctgatggccgtgaatttgaccgcatagataatccacagtttgagggttacaagttcgac
cctcatggagaatatgtacgacgttggcttcctgaacttgctaggataccaactgaatgg
atacaccacccatggaatgcaccagaacctgtcctccaagctgctggaattgagctgggg
tcaaactaccctcttcctattgtagggatagatgcagcaaaagccaggttgcaagaagca
ctatcagagacgtggcaacaagaagcagcttcaagagctgtaattgaaaatggaactgag
gaagggcttggagactcctctgaatcaaccccaattgcctttcctcaagatatacaaatg
gcagagaatcatgaaccagtgaggaacaacccccctaccacaattcggcgttatgaggat
cagatggtcccaagcatgacttcttctttggtgagagtggaagaggaagaaccttctttg
gatattcaaaatttggcagcagatagcagagctgaagtcccaaccgatggacatgtaaat
caagaagcaacaagaaacacattaaacccagcagttgttcagaatgttcatagccacaat
cttccacaatttaatactccaatagtgctgaggaatgctgcagaagactccacagcagaa
tcatctagtagtattaggagagagagggatgggggtgtagttccagtttggtctccttca
acctctagttactcagagcagtttgtaggtgatgaaaatggtattggaactagttcatcg
tacttgcagaggcatcctcagtctcaccaaatagttaattggaggcggctatctcaaact
gggtag
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