Quercus lobata (valley oak): 115970818
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Entry
115970818 CDS
T07350
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115970818
09123 Folding, sorting and degradation
03018 RNA degradation
115970818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115970818
03041 Spliceosome [BR:
qlo03041
]
115970818
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115970818
mRNA degradation factors
5'-3' decay
Lsm complex
115970818
Spliceosome [BR:
qlo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
115970818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
115970818
NCBI-ProteinID:
XP_030946297
LinkDB
All DBs
Position
12:27274182..27277214
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AA seq
150 aa
AA seq
DB search
MLPLSLLKSAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRSDRKPPGVGRGRGRGREDGPGGRQPKGIGRGLDD
GGAKGMGGGRGRGGSGGKAGGSRGAGRGRG
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atgcttccgctttctctacttaagagtgcccaagggcacccaatgttggtcgaactgaaa
aatggtgagacctacaacgggcatttggtcaattgtgatacttggatgaacattcatctc
cgggaagtcatctgcacctctaaagatggagataggttttggcgaatgcctgaatgctac
atccgtgggaatacaatcaagtatcttagagttcctgatgaggtgatcgataaggttcaa
gaagaaactaagagccgttcagataggaagccacctggtgttggtcgtggacgaggacga
ggtagggaggatggtcctggtggacgccaaccgaaaggaattgggcgtggcttggatgat
ggaggtgctaagggtatgggtggaggccgaggtagaggtggatctggaggaaaggctggc
ggaagcagaggtgcagggcgcggtcgtggctga
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