Quercus lobata (valley oak): 115971132
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Entry
115971132 CDS
T07350
Name
(RefSeq) transcription initiation factor TFIID subunit 4b isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115971132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115971132
03036 Chromosome and associated proteins [BR:
qlo03036
]
115971132
Transcription machinery [BR:
qlo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115971132
Coactivators
SAGA/TFTC/STAGA complex
115971132
Chromosome and associated proteins [BR:
qlo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
115971132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
SPMIP10-like
Motif
Other DBs
NCBI-GeneID:
115971132
NCBI-ProteinID:
XP_030946693
LinkDB
All DBs
Position
12:complement(37604310..37615932)
Genome browser
AA seq
969 aa
AA seq
DB search
MDPSIMKLLEEDEDESMHSGADVEAFQAALNRDIGGDTSTSHSHSHSQQPSDSDNVLSQG
NNHAPSQSLPLWQTASQDQGTECQNQQDQRNAQKQEQTISGMELKQHGSVIENQQQQSDA
SKELNCLQMSQKRTQDDCQQGPAQQISIQNPQQIHIQNPQKIPIQNPQTTGMQISEKTPI
LVHEPDRSSSIEGESQYSKLQKISNQQATITERASNPINNNNRAGQVPFGLLLPVLQAQL
DKDRAMQLQTIFAKLKKNEIPKEGFVRLMRGIVGDQMLKMAIQKIQSQPSANQLQLQSQV
SARQHPQRMPSVNASSTQFSDPHSFAQLHQKGTISSADPSHIPSSVVDSSYPAIENNAQK
SREVNRPSDSHGVPVSQVTSSNVNTVNQERERSSIPAQGLNKQQQHLHFPPIYGGSGGNY
HPYSGSNVNTSTSSVKPQPHDAQMRQISQHQNMSPTQLGGTTQAMSMPKFERPNSVNDPK
RVQGGSLSHLANNSTSQQNPVPWQSATNKEQISTPSSLVAGVKQEVIDQPTQQQHKLNFP
HPHGLSSGSAAQVEQGNTTPGTVKEESSEKQSTRMGLSTSTSMMPSNSVSRSITAQLEST
VPQLGTQIPPTASSAGINARTPPKKPSIGQKKPLEAHGSSPPLPSKKQKVSGAFSDQSIE
QLNDVTAVSGVNLREEEEQLFSGPKEDSRASEASRRVVQEEEERLILQKAPLHKKLAEIM
AKSGLKCISNDVERCLSLCVEERMRGLISNLIRLSKQRVDIEKPRHRTVVTSDVQQQIMT
MNRKAREEWEKKQAEAEKLRRLNDPEGNNGVDGDKEKDDGRGKSLKANKEEDDKMRTTAA
NVAARAAVGGDDMLSKWQLMAEQARQKREGGVDTSGSQPSKDVSRKPLSTSGRKDNQETE
KRGNAAPVAASAGTVRKSGRNQITLAQTRVARSISIKDVIAVLEREPQMSRSSLIYRLYE
RVRSDATTE
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atggatccttcaataatgaagctcctcgaagaagacgaggacgagagtatgcactcggga
gctgacgtggaggcatttcaggctgccctaaacagagacattggaggagatacgtccacc
tctcactctcactctcactctcagcagccctctgattctgataacgttttatctcaagga
aacaatcatgctcccagtcagtcattaccactgtggcaaactgctagccaagatcaaggt
actgaatgtcaaaatcaacaagaccaaagaaatgcacagaagcaagaacagactatatct
ggaatggagctaaagcaacacggatctgttattgaaaatcagcagcaacagagtgatgcc
tcgaaggaactcaattgcctccaaatgtcacagaaaagaacccaagatgattgtcaacag
gggccggcacaacaaatttccatccagaatcctcaacaaattcacatccagaatcctcaa
aaaattcccatccagaatcctcaaacaactggtatgcagatttctgaaaaaactcctatc
ctagtacatgagccagatagaagctctagtattgaaggtgaatctcaatattcaaaatta
cagaagataagtaatcaacaggcaacaatcacagagcgggcaagcaacccaataaataat
aataatagagcagggcaagtaccatttggcttgttgttgcctgtcttgcaagcccaactt
gataaagacagagccatgcaacttcaaacaatatttgctaaactgaagaaaaatgagatc
cccaaagaagggtttgttaggctcatgagaggtattgtgggagaccaaatgctcaaaatg
gcaattcagaaaatacaatcacagccaagtgccaaccaattgcagttacaatctcaagtt
tcagcacggcaacaccctcagcgaatgccatctgttaatgccagttccacacaattcagt
gatccccattcatttgcacaacttcatcagaagggcacgatctcttctgcagacccttcg
catattccctcttcagttgttgattcaagctatccagccatagaaaacaatgctcagaaa
tctcgagaggtgaatcgcccatcagattctcatggagtgcccgtaagccaagtgacttct
tccaatgtgaacactgtcaatcaagaaagggagcgatcctcaattcctgcacaaggactt
aacaagcagcaacaacatttgcacttcccacccatttatggaggtagtggtggtaattat
cacccatattctgggtcaaatgtcaatacttccacatcttctgtcaaaccacaacctcat
gatgcgcaaatgaggcaaatttcacaacatcagaacatgagcccaactcaattaggtggg
acaacacaagccatgagtatgcctaagtttgagagaccgaattctgtcaatgatccaaag
agagttcagggtggatctctttctcacttggcaaacaactcaacatcacaacagaatcca
gttccttggcaatcagcaacaaataaagaacaaatttctaccccttcatcattagtggct
ggtgtaaaacaggaagtgattgatcagcctactcagcagcagcacaaactcaattttccc
catccacatggattgtcttctggttctgctgcacaggtagaacagggaaatacaactcct
ggaactgtaaaggaagaatcttcagagaagcagtctactaggatgggtctttcaacttct
acgagcatgatgccttctaattcagtttctcgttccataacagcacaattggaatctact
gtcccgcagttaggcactcaaatcccacctacagcctcttctgctggtattaatgccagg
acacctcccaaaaagccttctattggccagaagaaaccactcgaagcacatggttcatca
ccacctctgccaagtaaaaagcaaaaagtatctggggccttttcagatcaaagcattgaa
caactaaatgatgtcactgctgtcagtggagttaatcttagggaagaggaagaacagcta
ttttctgggcccaaggaggacagtcgagcttcagaagcatctcgaagagttgtgcaagaa
gaagaagaaaggctgattttgcagaaagctcctctccataaaaagctggctgagatcatg
gccaaaagtggtttgaagtgtataagcaacgatgtggagcgatgcttgtcactgtgcgtg
gaagaaagaatgcgcggactaataagtaatctaatcagactgtcaaaacagcgggttgat
attgagaaaccaagacaccgaactgttgtcacctcagatgttcaacaacaaatcatgaca
atgaataggaaagctagggaggaatgggaaaaaaaacaggctgaagcagagaagctgcgg
agacttaatgatcctgagggtaataatggagttgatggtgacaaggagaaagatgatggt
cgtggtaaatcacttaaggcaaacaaagaggaagatgacaaaatgaggacaacagcggca
aatgttgcagcccgtgctgctgttggaggagatgacatgctttcaaaatggcaactaatg
gctgagcaagcccggcagaaacgtgaaggaggggtagatacatctggttctcaaccaagt
aaagatgtgagtcgcaagcctttatcaacatctggaagaaaggacaaccaagaaacagag
aaaaggggcaatgcagctcctgttgctgcttctgctgggactgttagaaaatctggaagg
aatcaaattactctggctcaaactagggttgctcgtagcatctccattaaagatgtgatt
gcagtcctggaaagggaaccccagatgtctaggtcttctctgatatatcgcttgtatgag
agagttcgctctgatgccaccactgaataa
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