Quercus lobata (valley oak): 115971186
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Entry
115971186 CDS
T07350
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115971186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qlo03041
]
115971186
03009 Ribosome biogenesis [BR:
qlo03009
]
115971186
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115971186
Spliceosome [BR:
qlo03041
]
Complex A
U2 snRNP components
U2 related factors
115971186
Complex B
115971186
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
115971186
Ribosome biogenesis [BR:
qlo03009
]
Eukaryotic type
90S particles
Helicases
115971186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
T2SSE
FtsK_SpoIIIE
AAA_7
AAA_30
Flavi_DEAD
TsaE
AAA_29
Motif
Other DBs
NCBI-GeneID:
115971186
NCBI-ProteinID:
XP_030946787
LinkDB
All DBs
Position
12:complement(18945141..18949864)
Genome browser
AA seq
738 aa
AA seq
DB search
MGTERKRKVSLFDVVDESKIAKINGGAFSSSAAAMSNSVSIIGGGNSSNPAINSWTGRPY
SQRYYEILEKRRGLPVWHQKEEFLQVLKANQTLILVGETGSGKTTQIPQFVLEAIDLETP
DKRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGM
LLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKF
QGYFFQAPLMKVPGRLHPVEIFYTEEPERDYLEAAIRTVVQIHMCETPGDILVFLTGEEE
IEDACRKINKEVANMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPVKEGGPAGRKIVVS
TNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGK
CFRLYTEKSFQNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRAL
EVLNYLGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCF
VRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNQRALKAADNV
RQQLVRIMARFNLKLCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVH
LHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWIIDIAPHYYDLTNFPQCEAKRVL
EKLYKKREKEREESRNRK
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgggaacggagaggaagaggaaggtgagcttgttcgacgtggtggacgagtcgaagatc
gccaaaatcaacggcggcgccttctcgtcctcggcggcggcgatgagcaacagtgttagt
attattggcggaggtaatagcagcaaccccgcgatcaatagctggacggggaggccgtac
tcgcagaggtactatgagattttggagaagcggagaggcttgcctgtttggcaccagaaa
gaagagttcttgcaagttctcaaggctaaccagactctcatcctcgtcggtgagactggt
agtggcaaaaccactcagattccccagttcgttttggaagcaattgatttagaaactcca
gataagcgcaggaagatgatgattgcgtgcacccagcctcgtagggtggctgctatgtct
gtttctcgtcgtgttgctgaagagatggatgtaactatcggagaagaggttggttatagt
atccgttttgaagactgcagtagtgcaagaacagttttgaagtatttaacagatggtatg
cttttaagagaagcgatgacagatccgcttttggaacgctacaaggtcataattcttgat
gaggctcacgaaagaacattggcaactgatgttctgtttggacttctgaaggaagtgttg
aaaaatagacctgacctgaagctagttgtaatgagtgctactcttgaggctgaaaaattt
cagggttatttttttcaagcaccacttatgaaagttcctgggaggcttcatccggtggaa
atattttacactgaagagcctgaaagggactacctggaggcagcaatccgaactgttgtg
caaattcatatgtgtgaaactcctggagatatacttgtgtttctcactggtgaggaggag
atagaagatgcatgccgaaaaataaataaagaagttgcaaatatgggtgaccaggtggga
cctgtcaaagtagtgcctttgtattctacccttcctccggctatgcagcagaagatattc
gagccagctccacctcctgtgaaagagggtggccctgctggaaggaagattgtggtgtca
acaaacattgctgaaacttctttgaccattgatggtatagtatatgtaattgaccctggg
tttgcaaaacaaaaagtttataacccacgagtgcgtgtggaatcattgttggtatctccg
atctctaaggctagtgcacaccagagatcagggcgtgctggaagaactcagcctggaaaa
tgctttagactttacactgagaaaagtttccagaatgatcttcaaccacagacctatcca
gaaatattaagatcaaaccttgcaaatacggttcttactttgaagaaactgggaatagat
gatctagtgcattttgattttatggatccccctgctccagagacattgatgcgggcttta
gaggttttgaattacctgggagcgttagatgatgatggaaatctgacaaagctgggcgaa
attatgagtgaatttccattggatcctcagatgtcaaagatgctcgttgttagccctgag
ttcaactgttcaaatgaaattctatcagtttctgccatgctttcagtacccaattgcttt
gtccggcctagggaggctcagaaagctgctgatgaagcaaaagctaggtttgggcacatc
gatggagatcacctcacgctcttgaatgtataccatgcatacaagcaaaacaatgaggac
ccatcatggtgctatgagaacttcgtcaaccaaagggcgttgaaggccgctgataatgtt
agacaacagctcgtgcgtatcatggccaggtttaacctcaaattgtgcagcactgatttc
aacagccgtgattactacatcaacataaggaaggctatgctagcaggttatttcatgcag
gtagctcacctggaacgtactggacactacttgacagtgaaggacaaccaagtggtgcac
ttgcatccatcgaattgcttggatcacaagccggagtgggtcatctataatgaatatgtt
ctaacaagcaggaatttcattcggacggtgacagatattcgtggtgaatggataattgat
atagcaccacattattatgatctgacgaacttcccgcagtgtgaggctaagcgtgttctt
gagaagctttacaagaagcgggagaaggagagggaggagagcaggaacagaaagtga
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