Quercus lobata (valley oak): 115971424
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Entry
115971424 CDS
T07350
Name
(RefSeq) nuclear pore complex protein NUP98B
KO
K14295
nuclear pore complex protein Nup50
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115971424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115971424
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115971424
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ran_BP1
EVH1_PP4R3
SPCC191_01
TcaA_2nd
Motif
Other DBs
NCBI-GeneID:
115971424
NCBI-ProteinID:
XP_030947202
UniProt:
A0A7N2N2S4
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All DBs
Position
12:complement(17070450..17079572)
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AA seq
447 aa
AA seq
DB search
MKGTKRFAMSDSIPDTNDTAFRNKRVMEGSSADVHRAEPSQQLTMTPPLDMQRAKSSCQH
VRALNTQFASWVQAQLKNHPDELWEDGVRDYLAHASNIMEKFSDVVNWLKANAANGGSSS
AAESQTKENKMFNETKNSGIKLSQEKAAITLAGTSSSFGTPWSSGLLFNNQSTGFPPAST
TTPSATSFSSGAFSNSQTPGSIPGTATAFANSFSSGALSNSQSPGSTPASTTTAFATSLS
SGLFSNNQAPGFIPASTTASFPNLWSSGVFSNNQTPVSFGIQNSGTVNQSSVPTNCDATD
DADGENELEQPSSPSVKKSEEKGIVVVHEVKCKLYVKSSDPADKDAWKDKGMGQLSIKCK
EGVDKGTKESKPTIIVRNDVGKLLLNALLYPGIKTNLQKNSIVAIFHTSGDNDGSDKVVA
RTFLIRTKTEEDRNKLATAMQEYAPAS
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggaacgaaacgttttgccatgtccgactccattcccgacacgaacgacacggcc
ttccgtaataaaagagtgatggaaggatctagtgctgatgttcatagggcagagccatct
cagcagttgactatgacgcctccattggatatgcaacgggctaagtcatcttgtcagcat
gtgagagctctcaatacccagtttgcaagttgggtccaagcacaattgaagaaccaccct
gatgaactttgggaagacggtgtccgggactaccttgctcatgcttcaaacattatggag
aagttcagtgatgttgtcaactggctcaaagcaaatgcagccaatggaggtagttcttct
gctgcagaatctcaaaccaaggaaaataaaatgtttaatgaaaccaagaatagtgggata
aagttatctcaagagaaagctgccataactctagcgggtacctcttcaagctttggaaca
ccatggagttctggacttttattcaataaccaatctactgggtttcctccagcgagcaca
actacaccatcagcaacttcatttagctctggagcattttcaaacagtcaaacccctgga
tctattccaggcacagccactgcctttgcaaattcatttagctctggagcactttcaaat
agtcaaagccctggatctactccagcaagcacaaccacagcctttgcaacttcattgagc
tctggattattttcaaacaatcaagcccctggatttattccagcaagtacaactgcaagc
tttccaaatttatggagctctggagtattttcaaacaatcaaactcctgtctcttttgga
attcaaaattcaggcactgttaatcaaagttcagttcccacaaactgtgatgctaccgat
gatgcagatggtgaaaatgagttggagcagcctagcagcccatcagtaaaaaagtctgag
gagaagggaatagttgttgttcatgaagtcaagtgcaagctttatgtgaagtcaagtgat
ccggcagataaagatgcatggaaagacaaaggcatggggcaactttccatcaaatgcaaa
gagggtgtcgacaagggtacaaaagaatccaaaccaacaataattgttagaaatgatgtt
gggaaactgctgcttaatgctttgctataccctggcatcaagacaaatttgcagaagaat
tccattgttgcaatattccatacttcgggtgataatgatggaagtgataaagttgttgca
cgaaccttcttaattaggacaaaaacggaggaagatcgaaataagctggctacagcaatg
caagaatatgcccctgcatcatga
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