Quercus lobata (valley oak): 115971484
Help
Entry
115971484 CDS
T07350
Name
(RefSeq) probable pectate lyase 9
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo00040
Pentose and glucuronate interconversions
qlo01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
115971484
Enzymes [BR:
qlo01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
115971484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
115971484
NCBI-ProteinID:
XP_030947294
LinkDB
All DBs
Position
12:34197586..34199187
Genome browser
AA seq
367 aa
AA seq
DB search
MLSISNVSLAKKTKITGLKMNVIDHCWRWNPNWRRNRQQLATCSVGYAGKMTNNIGRGLT
QYVVTEPSDNPINPKPGTLRYGTTMIKGKKWITFQRSMRIRLEKPLLISSFTTIDGRGVN
IHIAGNACLMIYKQSNIIIHGLRIHHCQSQPPSTVMGPDSKIISLGQVDGDAIRLVTASK
VWLDHNTLYESEDGLLDVTRGSTDITISNNWFKNQDKVILLGHDDGFLRDKNMKVTVMYN
HFGPNCNQRMPRIRFGYAHVVNNLYQGWMQYAIGGSMNPSVKSQANLFIAPKSRNKEVTW
RNGERGSWKFYSVNDVFENGARFIETGAGGVKPNYSHEQVFPAADARTVRSLTKSAGALR
CIPRSRC
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgctctccatttctaatgttagtcttgctaagaaaacaaagatcactggcttgaaaatg
aatgtgattgatcattgctggagatggaaccctaattggcgaaggaatagacaacaactt
gccacatgctcagtaggttatgctgggaagatgaccaacaacattggaagaggcctcaca
caatatgtagtcactgaacctagtgacaacccaattaacccaaaaccagggaccttaaga
tatggaacaaccatgatcaaagggaaaaaatggatcacattccaaagaagcatgcgcatt
agacttgagaaaccacttctcattagtagtttcacaaccattgatggtcggggtgttaat
attcacattgccggtaatgcatgcttgatgatctataagcaaagcaacataatcattcat
ggtcttcgcatccaccattgtcaatcccaaccacctagcacagtaatgggtccagactca
aagataatttcactaggtcaagttgatggagatgcaattagattggttactgcatcgaag
gtttggctagaccacaatacactttatgagagtgaggatggtcttcttgatgtaactcga
ggttctacagatatcaccatctccaataactggttcaaaaaccaggataaggtcatcctt
cttggacacgatgatgggttcttgcgtgacaagaacatgaaggtcacagtcatgtacaat
cattttggacctaattgcaatcaaaggatgccaaggattcgatttggatatgcacatgtg
gtgaacaacctttaccagggatggatgcaatatgctatagggggaagcatgaatcctagt
gtcaagagtcaagccaacctctttattgcaccaaaatcacggaacaaggaggtgacatgg
agaaatggtgaaagagggtcatggaaattttactcggtaaatgatgtatttgaaaatgga
gctagattcattgaaacaggtgctggtggggtaaaaccaaactatagccatgaacaagtt
ttcccagctgcagatgcaagaacagtgaggtctttgacaaaatcagctggtgctttacga
tgcataccacgatctagatgctga
DBGET
integrated database retrieval system
