Quercus lobata (valley oak): 115971485
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Entry
115971485 CDS
T07350
Name
(RefSeq) RNA polymerase sigma factor sigC isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115971485
Transcription machinery [BR:
qlo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
115971485
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Motif
Other DBs
NCBI-GeneID:
115971485
NCBI-ProteinID:
XP_030947295
UniProt:
A0A7N2N4Y9
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Position
12:40816834..40822533
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AA seq
572 aa
AA seq
DB search
MGFGFRLNLKWGFPIQSHSLTNSPSRLSSSYVRGKEASLNLTRQSFVSVISEESETFYKD
PLKADTCSAAAPLFMENNFSEMEDMKKNIRKRSYSSLHNMIDDTQVPVEEDKFTSCTSLQ
GSKEANFNLLMENLHVLEETFVDSDVLRLERDILQQLGRLGAINLFNTCLSRTVQISNLL
DLSDIPTDYTEHEKKSKTDENAEDEMKGKTDDCIGKVVVRSRKKRERKSRGKKTLENACE
TSLLLLPSKTIQQRFGQPNISSVKRASSSRSRRLKISRNEAEMSTGVKVVANLERIRRTL
EEETGRVATISCWAEAAGLDEKVLQQNLHFGWYCRDEIIRSTRSLVLYLARNYRGLGIAL
EDLIQAGNLGVLQGAERFDHTRGYRFSTYVQYWIRKSMSRMVAQHARGIQIPYTLCSAIN
QIQKAKTALNSGHKKYPDDDEIAKHTGLSLAKIRSASKCLRVVGSIDQKMGHCINIKYME
LTPDMSVKSPEETVMRQHMIKDIHDLLRGLDSRERQALFLRYGLKDNQPKSLEESGRLLC
VTKEWMRKIEKKALTKLRDEDICRNLSHYLDL
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgggtttcggtttcaggctaaatctgaagtggggttttcctattcagtctcattccctc
accaattcaccctccagactttcctcatcttatgttagaggcaaggaggcttctctcaac
ttgacaaggcagtcttttgtgtctgttatttctgaggagagtgagacattttataaagat
cctctgaaagcagacacttgttcagctgcagctccactcttcatggagaataatttctca
gaaatggaagacatgaagaaaaacattaggaagaggtcatacagtagtctacataacatg
atcgatgatacccaggtacctgttgaagaggacaaatttacttcctgcacaagcttacaa
gggagcaaggaagcaaattttaatttgttaatggaaaatcttcacgttttagaggaaact
ttcgttgattcggacgtgctaaggttggaaagagatattctgcagcaactaggaaggctt
ggagctataaacttattcaatacctgtctatcaagaacggttcaaatctcaaatctattg
gatttgtctgacatacctactgattatacagagcacgagaagaaaagcaaaacagacgag
aatgcagaagatgagatgaaaggcaaaacagatgattgcataggtaaagttgttgttcgc
tccaggaaaaagagggaaagaaaatcaagaggaaaaaaaacattggaaaatgcctgtgaa
acttctcttctgttattgccttcaaaaaccattcagcaacgttttggacagcctaatatt
tcatctgtaaaaagggcatcaagttctagaagtagaaggcttaagatttctaggaatgag
gctgaaatgtcaacaggggttaaggtggttgcaaacttggagagaatcagaagaactttg
gaagaggaaactgggcgagtagccaccataagttgctgggcagaagcagctggacttgat
gaaaaggtgctgcagcagaatttgcattttggttggtattgcagggatgagattataagg
agtactcgctccttagttctataccttgcaagaaactatagaggcctgggaatagccttg
gaagatttaattcaggctggaaatctgggagtgctccaaggtgctgaaaggtttgatcat
actaggggttaccgattttcaacctatgtccagtactggataaggaaatcaatgtcaaga
atggtagcacagcatgctaggggaattcaaattccttacacattgtgcagtgcaataaat
cagatacagaaagctaaaacagcccttaacagtggccacaagaaatacccagatgatgat
gaaattgcaaagcacacaggtctttctttggctaaaattagatcggctagcaaatgctta
agagttgtgggttcaattgatcagaagatgggacattgcatcaatataaaatatatggaa
cttacacctgatatgtcggtaaagagcccggaagaaactgtcatgaggcaacacatgata
aaagacattcatgatctcttaagaggcttggattcaagagagaggcaagcgttgttccta
cggtatggtcttaaggacaatcagcctaaatcacttgaggaatctgggaggcttctttgt
gtgaccaaggagtggatgcggaaaattgaaaagaaggctctaacaaagctaagggatgaa
gatatctgcagaaatttaagccattatttggatttgtag
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