KEGG   Quercus lobata (valley oak): 115971867
Entry
115971867         CDS       T07350                                 
Name
(RefSeq) lysine-specific demethylase 5B isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
qlo  Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:qlo01009]
    115971867
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:qlo03036]
    115971867
Enzymes [BR:qlo01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     115971867
Protein phosphatases and associated proteins [BR:qlo01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     115971867
Chromosome and associated proteins [BR:qlo03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    115971867
SSDB
Motif
Pfam: PLU-1 JmjC PHD JmjN zf-C5HC2 ARID KDM5_C-hel PHD_5 PHDvar_NSD BT_3657-like_N
Other DBs
NCBI-GeneID: 115971867
NCBI-ProteinID: XP_030947809
LinkDB
Position
12:33227244..33257840
AA seq 1839 aa
MGKGRPRAVEKGVSGQNLSVSPSGSLNIPSGPVYYPTEDEFRDPLEYICKIRPEAEPYGI
CRIVPPKNWKPPFALDEGSFTFPTKTQAIHQLQARPAACDSETFELEYGRFLDDHCGKKL
RKKVVFEGEELDLCKLFNAVKRYGGYDKVVKEKKWGEVSRFVKSARKISECAKHVLCQLY
REHLYDYEKYYNRLNRKAGSGCKRRLHKEGKSEHEAEFSGSKRRRKNNSGDKVKVCKVEV
EEERDQICEQCRSGLHGEVMLLCDRCNKGWHIYCLSPPLKQVPPGNWYCLECLNSDKDCF
GFVPGKRYSLESFRRAAERAKKRWFGSGSPSRVQIEKKFWEIVEGSVGEVEVMYGSDLDT
SIYGSGFPRANDQRPEAVEAKAWDEYCDSPWNLNKLPKLKGSMLQALHQNITGVMVPWLY
IGMLFSAFCWHFEDHCFYSMNYLHWGEPKCWYSVPGNQASAFEEVMQKTLPDLFDAQPDL
LFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWL
PHGGFGADRYREYHKAAVLSHEELLCVAAKQSDCNRRVSSYLKEELLRIYTNEKSCRERL
WKNGIIKSSPMSPRKCPEYVGTEEDPTCIICKQYLYLSAVACRCRPSAFVCLQHWERLCE
CKSSKLRLLYRHTLAELYDLVLTMDKYSCEETTQSRNIRRQISCSIEPKALKKKVNGGHV
TLDQLAAQWLLRSAKIFQSPFSSESCVAALKEAEQLLWAGSEMDLVRDTVKKLIKAQKWA
EGIRDCVSKIENRSRHCGVDLDKIHFEYVEELLSFNPLPCNEPEHLKLKEYAEGARLLIQ
KIDNALSTCTKISVLEFLYSQTCDLPIYVKEIEKLSLKISSVKVWIENVRKCISEKHPTA
IEVDILYKLKQQISELQVELPETDMLLDLLRQAELCRAQCGEILKGPISLKNLEVLLQEL
NSCTVDIPELKLLRQYHSDAVLWISRFNEVLVNISEREDQHNVVDELNCILKDGASLRIQ
VDELPLVGVELKKACCRKKALKARHMKMSMDFIQQLTMEASVLEIEIEKLFVDMPGILAV
AMHWEERAKDILAHEAALCDFEDVIRASEDIFVVLPSLNDVKDAVLIAKSWLKKSKPFLT
SALSEAPASSSLLEFEVLKELVSQSKLLKISLDERRVLETFLKKCEEWVCDACSLLQDVG
RIFNMCNIGDGIRNCVISKVECMVSKVESTMKSGLSLGFDFREIPELQDACSTLQWCKKA
LSFCSGAPAFEDVESLMESVEQLPHSRASGPLCSSLIVGIKWFKKAAEAISVPRGFKRCN
LRDVEEILAENTNVSFPVMVGQLENSIQKHKLWQEQVLQFFNLKLEHRSWSQMLELKELG
NAVAFSCSELDMVLCKVERVEKWVQRCIDVIGENNSLLDALRKIKQTLDRSLYIYDTSCP
CKTRNLCVCCSNDNDDLALLTCSTCKYCYHLRCLGPTTIDSNHAEEYICCYCQILEGGSI
FQNKGGPMRLGGKRLELQMLVELLSDAKDFSLWIEERDVLEQLVDQAQACRTFLTEIVNF
ALAYFDKDLGVVSEKLTTALKAIEVAGLYDHQANHSLELALTRYSWRFKVNRLLGGLQKP
TIQQIQQHLKEGLSMSIPPEDYYRQRLTEVKRIGLQWAERARKVATDSGVLSLDKVFELI
MEGENLPFYLEKEIKLLRERSMLYCICRKPYDQRKMIACDQCDEWYHFDCINLVSTPKVY
ICPACKPQQQDLSATPSVDLDRSISVKFVEPKTPSPIHTKKLKEAEPSPRQKMLSITDHS
NSFSSGIERLWWRNRKPFRRAAKKRAELEILSPFFHVQQ
NT seq 5520 nt   +upstreamnt  +downstreamnt
atggggaaaggtagacctagggctgttgagaagggtgtgtcagggcaaaatcttagtgtt
tcgccatctgggtcattgaatataccatctgggcctgtgtattatccaactgaggatgaa
tttagagaccctttggagtatatatgtaagattaggccggaggctgagccttatgggatt
tgtaggatagttccaccaaagaattggaagcccccatttgcattggatgagggttccttt
acttttcccactaaaacacaagccattcatcagttacaggcgcggcccgccgcgtgtgat
tcggagacttttgagttggagtatggtaggtttttggatgatcattgtgggaagaagttg
aggaagaaggtggttttcgagggggaggagttggatttgtgtaaattgtttaacgccgtg
aagcggtatggtggttatgataaggttgtcaaggagaagaagtggggggaggtctcgcgg
ttcgtgaagtcggcgaggaagatttcggagtgtgcaaagcatgtgttgtgtcagttgtat
cgagagcatttgtatgattatgagaaatattataatcggttgaatcgaaaggcaggtagt
ggttgtaagaggagattgcataaggaggggaagagtgaacatgaggctgaattttcgggc
tcgaaaaggaggcgaaagaataatagtggggataaagttaaggtttgtaaggtagaggtg
gaggaagagcgtgatcagatatgtgaacagtgcagaagtggattgcatggggaagtgatg
cttctgtgtgataggtgcaataaggggtggcatatttattgtctttctccgcctttaaag
caggtcccacctgggaattggtattgcttagagtgcttgaattctgacaaggattgcttt
ggttttgtgcctggtaaacggtactcattggaatcttttaggcgtgcggccgaacgtgcc
aagaagagatggtttgggtcaggatctccttcacgggttcaaattgagaaaaagttctgg
gaaattgtggagggatcggttggtgaggttgaagttatgtacggtagtgacttggataca
tctatatatggcagtggttttccacgtgcaaatgaccagagaccagaagcagttgaagct
aaagcttgggatgaatactgtgatagtccttggaatcttaataaattgcctaagttgaaa
gggtcaatgcttcaagctcttcatcaaaacattactggtgttatggtgccctggctgtat
attgggatgctattctcggctttttgctggcattttgaagatcactgtttttactcaatg
aattatctacactggggagagccaaaatgttggtacagtgtccctggtaatcaagccagt
gcttttgaagaggtcatgcagaagactcttcccgatctttttgatgcacaaccagatctg
ctcttccagcttgtcaccatgttgaatccatctgtcttgcaagaaaatggagttcctgtc
tatagcattctacaggagcctggtaattttgtcatcaccttcccaagatcataccatgga
ggtttcaatcttggtttaaattgtgccgaggccgtcaattttgctcctgctgactggctg
cctcatggtggatttggagcagatcggtatcgggagtatcacaaagctgctgtgttgtct
catgaggagcttctttgtgttgcagccaagcagagtgactgcaataggcgagtatcatct
tatctgaaggaagaattgcttagaatatatactaatgagaaaagttgtagagagcgactt
tggaaaaatggcattataaaatcatctcccatgtcccctcggaaatgtcctgaatatgtg
ggtactgaggaggatccaacatgcattatttgcaagcagtatctttatctctctgcagtt
gcttgccggtgtaggccatctgcctttgtatgtctgcagcattgggaacgcctttgtgaa
tgcaaatccagtaaactgcgtcttctttatcgtcatacacttgctgaattgtatgacttg
gtgcttacaatggataaatatagttgtgaagagacgacacaaagtagaaatatacggagg
caaatatcttgttccattgaaccaaaggctttgaaaaaaaaggtgaatggtggccatgtt
acccttgatcagcttgcagcacaatggcttttgcgttcagctaagatttttcagagtcca
ttttcaagtgaatcctgtgttgccgcgttgaaggaagctgaacagctcctttgggctggt
tctgaaatggatttggtgcgagacacagtaaagaagttgattaaagctcagaaatgggca
gaagggataagagattgtgtatctaaaattgaaaaccggtcacgtcattgcggtgttgat
ctggataaaattcactttgaatatgttgaagagttgctgagtttcaatcctttgccctgc
aatgagcctgagcatctcaagttgaaggagtatgcagaaggggcaagactgttgattcag
aaaattgataatgctctatcaacatgcacaaagatttctgttttggaattcttgtactcc
caaacttgtgacttaccaatttatgtaaaagagattgagaagttatcactgaaaatttct
tcagtaaaggtctggatagaaaacgtaagaaaatgcatctcggagaaacatcctactgca
attgaggttgatatcctctacaagttaaagcaacagatttctgagcttcaagttgaactc
ccagagacagacatgcttctagacctattaaggcaagctgaattatgtcgtgctcagtgt
ggtgagattttgaaaggtcctattagtctaaagaatctcgaagtgcttcttcaagaattg
aatagttgtactgttgacataccagagttgaagcttctgaggcaataccatagtgatgct
gttttatggatctcccgcttcaatgaagtcctggtgaacattagtgaacgcgaggatcag
cacaatgtggttgatgagttaaattgcattctcaaggatggagcatctttaagaattcaa
gttgatgaattgcctctagttggtgttgagttgaagaaggcctgttgcaggaaaaaagct
cttaaggcacgacatatgaaaatgtctatggacttcattcagcaactgacgatggaggct
tctgtgcttgagattgagatagagaaattatttgttgatatgcctggaatacttgctgtt
gccatgcattgggaagaaagagcaaaagatattcttgcacatgaggctgcattgtgcgac
tttgaggatgtcataagggcttcggaagacatatttgtggttctaccttctcttaatgat
gtcaaagatgcagtgttaatagccaagtcctggttaaagaagtcaaagccctttttaact
tctgctttgtctgaagctcctgcctcaagctctttgctagaatttgaggtgttgaaggag
ttggtttctcagtcaaagcttctgaagatatctttggacgaaagaagggtgctagaaaca
tttttgaagaagtgtgaggagtgggtgtgtgacgcatgttctctactgcaagatgttgga
cgcatatttaatatgtgtaatattggtgatggaatacgcaactgtgttatttccaaagtg
gaatgtatggtttctaaagtggaatccaccatgaaaagtggtttatctcttggttttgac
ttccgtgagattccggaacttcaagatgcatgctctacacttcaatggtgcaagaaggcc
ctttctttctgctctggtgctcctgcttttgaggatgttgagagcttgatggagtctgtt
gagcaacttccccattcacgtgcctctggtcctttatgcagctcgttgattgttggcatt
aaatggtttaagaaagccgcagaggcaatctctgtgccacgcggtttcaaaagatgcaat
ttgagggatgttgaagaaattcttgctgagaataccaatgtctcctttccagtgatggtt
ggtcaacttgaaaattctatccagaaacataagctgtggcaagaacaagtgcttcagttt
ttcaatctaaagcttgagcatcgatcttggtctcaaatgctagagctcaaggaacttgga
aatgctgttgcttttagttgctcagaactcgatatggtcttatgtaaagttgaaagggtt
gagaagtgggtgcagcgctgcatagatgtgattggagagaacaattctttgcttgatgct
ttacgaaagataaagcagactctagatagatctttgtatatatatgacacgtcatgcccc
tgtaaaaccagaaacttatgtgtctgctgctccaatgataatgatgacctggcgcttctt
acttgttctacatgcaagtactgctatcatttgcggtgcctaggaccaacgacaatagat
tcaaatcatgccgaagagtatatatgttgttattgccaaattttggagggtggatcaatt
tttcaaaataaaggcggtcctatgagattgggagggaagcgtcttgaattacaaatgctt
gttgaacttctatctgatgctaaagacttttctttgtggattgaggaaagagatgtattg
gaacagcttgtggatcaagctcaggcatgcagaactttcttgacagaaatagtcaatttt
gctttagcttattttgataaagatctcggtgtggtctctgaaaaattaactactgctctt
aaggccattgaagtggcaggtctttatgatcatcaagctaatcacagccttgagctggca
ttaacaagatactcttggagattcaaagtcaataggttattagggggtttacaaaagccc
acgatccaacagattcagcagcatttgaaagagggtctttctatgagcattccacctgaa
gattactataggcaaagacttacggaagtgaagcgtattggcttgcagtgggcagaacgt
gccaggaaggttgcaactgattctggagttcttagtttagataaagtttttgaacttatc
atggaaggtgaaaatttgcctttttacttggagaaggaaattaagttactacgagaacga
agtatgctttattgtatttgtcgaaagccatatgatcagagaaaaatgattgcttgtgat
caatgtgatgagtggtaccattttgattgcattaacttagtttccacaccaaaggtctac
atctgtcctgcttgtaagcctcaacaacaagacttgtctgcaacaccttcagttgatctt
gatagatcaattagtgtcaagtttgtagagcctaaaacaccttctcctatacatacaaag
aaactgaaagaagctgagcctagtccaaggcaaaagatgctttcaattacagatcatagt
aatagttttagcagtgggattgaacgcttatggtggcgaaatcggaagcccttcagaaga
gcagcaaaaaaacgtgctgagcttgaaattctttccccatttttccatgtacaacaataa

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