Quercus lobata (valley oak): 115971905
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Entry
115971905 CDS
T07350
Name
(RefSeq) DNA mismatch repair protein MSH6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
115971905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115971905
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
115971905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
LBR_tudor
ResT-TelK_cat
Agenet
ALS_ss_C
Motif
Other DBs
NCBI-GeneID:
115971905
NCBI-ProteinID:
XP_030947866
LinkDB
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Position
12:20092989..20103590
Genome browser
AA seq
1307 aa
AA seq
DB search
MASSRRQSNGRSPIVNQQRQITAFFTKTTSSSPSPSPSPTLSKQNSKFSSSVPNPNPSST
PTPNSSPSPTTPSPFQSKSKNKPLLVISASPLTPNDKRSYGDDVVGKRIRVFWPLDKAWY
EGTVKSFDKVANKHLVQYEDDEEELLDLEKEKFEWVQETLKNFKRLRRGALDSSEAVEIV
EEEKGVKEIKPVQRRRGVKAVVEDEDDSSDEDWGKNVGEEAVEEVMDLDEEEEEDVVKGK
GSKGKRGSRKRKALGSAKKNKGGFKFSLLEPTSINAESGKASNELGNALTGDATERFGTR
EAVKFRFLGEERRDAKRRRPGDANYDPRTLYLPPDFLKSLSGGQRQWWEFKSKHMDKVLF
FKMGKFYELFEMDAHIGAKELDLQYMKGEQPHCGFPEKNFSMNLEKLARKGYRVLVVEQT
ETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEMLSANPDASYLMAVTEGCQRLAN
QNADRIFGVCVVDVTTSRIILGQFGDDAECSALCCLLSELRPVEIVKPAKQLSPETERVL
LRHTRNPLVNDLVPLLEFWDAEKTVHEFKSSYSRIVEQSVSGSLNETNLDGLQSQVEENG
MGWLPDVLSDLVKAGENGSCALSALGGTIFYLKQAFLDETLLRFAKFELLPCSGFANIVS
KPYMVLDAAALENLEIFENSRNGDSSGTLYAQLNHCVTSIGKRLLKTWLARPLYHPESIR
ERQDAVGGLRGVNLAFALEFRKALSRLPDMERLLARVFASSEANGRNANKVVLYEDAAKK
QLQEFILVLRGCESMAQLCSSLSVILENVESRVLHHLLTLGVGLPNIDSVINHFKDAFDW
VEANDSGRIIPHEGVDLEYDSACKKVKEVESSLTKHLKNQQKLLGDASITYVTIGKEAYL
LEVPESLRERIPRDYELRSSKKGFFRYWTPSIKKLLGELSQAESEKESMLKSILQRLIGR
FCEHHNKWRQLVSATAELDVLIGLAIASEYYEGPTSRPIILDSSSSDEVPCFSAKSLGHP
VLRSDSLGNGTFVPNEIMIGGSGHPSFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPA
DSFELSPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVALDELGRGTSTS
DGQAIAYVESVLQHFVHKVQCRGMFSTHYHRLAVDYQNDPKVLLCHMGCRVGNGVGDVEE
VTFLYRLTPGACPKSYGVNVARLAGLPESVLQKAAAKSREFETTYGKHLKTFEDNLNNQS
WIGEMVEFVRKFIDITENFSCNKSPESTGASFPTELQHRAQILLQKI
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgtcacggcgccaaagcaatggccgatccccaatcgtaaaccaacagcgccaa
atcactgccttcttcaccaaaacgacctcgtcttctccatctccatctccatctcccact
ctttccaagcaaaattccaaattttctagttctgtccctaaccctaaccctagctctacc
cccacccccaattccagtccaagccctacaaccccttctcctttccaatccaagtccaag
aacaagcccctcttagtcatctccgcatcaccgttaactcctaacgataagagatcgtac
ggtgatgatgttgtggggaagaggattagggttttttggcccttggataaggcgtggtat
gaaggcactgtgaaatcttttgataaggtagctaacaagcatttggttcagtacgaggat
gatgaggaggagctattggatttggagaaggagaaatttgagtgggtccaagagaccctc
aagaacttcaagcggttgcgccggggtgcattggattcgagtgaggcggtggagattgtt
gaggaagagaagggtgtgaaggaaattaagccggtacagaggcggagaggcgtgaaggcc
gttgttgaggatgaggatgattctagtgatgaagattgggggaagaatgtgggggaagag
gcggtcgaggaagttatggatttggatgaggaggaagaagaggatgttgtgaaggggaag
gggtcgaaagggaagcgtgggtcgaggaagaggaaagcgttggggtctgctaagaagaac
aagggaggtttcaagttttccttgctggagcctactagtattaatgctgaaagtggaaag
gcatctaatgaacttggtaatgccttaacgggtgatgccacagagaggtttggtacgcgt
gaagctgtaaagtttcgcttccttggggaagaacgcagggatgcaaaaagaaggcgtcct
ggggatgcaaactatgatccgaggacactttacttgcctcctgattttctaaagagttta
tcaggtggccagagacaatggtgggagtttaagtcaaagcatatggacaaggtgttattt
ttcaagatgggaaaattttatgaactttttgaaatggatgcacatataggagcaaaggaa
cttgacttgcaatatatgaagggagaacaaccgcattgtggatttccagaaaagaacttc
tctatgaatttggagaaattggcaagaaagggttatcgggttcttgttgtagagcagaca
gaaacccctgaacaactagagcttcgtcgcaaagagaaaggttctaaggataaggttgtg
aaacgtgaaatatgtgcagtggttacaaaaggaacacttactgagggagagatgctgtca
gcaaatcctgatgcttcttacctaatggcagtgactgaaggctgtcagagattggcaaac
caaaatgcagaccgcatttttggtgtttgtgtggttgatgttacaaccagcaggattatt
cttggacagtttggggatgatgcagagtgcagtgccttgtgttgtctattgtctgagcta
aggccagttgaaattgtaaaacctgctaaacagctcagtcctgaaacagagagagtgctg
ctgagacatacaagaaatccattagtgaatgatttggttccactcttggaattctgggat
gctgagaaaaccgtgcatgaattcaaaagtagctacagccgtattgttgaacaatcagtt
tctggatctttaaatgaaacaaatttggatggtcttcagtctcaagtggaggaaaatggt
atgggctggctaccagatgttctgtcagatctggtaaaggcaggcgagaatggcagctgt
gcactttctgctcttggaggcacaatattctatcttaagcaggctttcctggatgagaca
ttacttcgatttgcaaagtttgagttacttccatgctctggttttgctaatatcgtctca
aaaccatacatggttcttgatgcagctgccctggagaaccttgagatttttgagaatagc
agaaatggagactcttcagggacgctctatgcccagttgaaccactgtgtgacatcaatt
gggaagaggttgctcaagacatggcttgcaaggcctttatatcatccagagtcaattagg
gaacggcaggatgctgttggaggtttgcggggagttaatctagcttttgcacttgaattt
agaaaagcactgtccaggctaccagacatggagcggttacttgcacgtgtttttgctagc
agtgaggctaatggaaggaatgccaacaaagtggttctatatgaggatgcagcaaaaaaa
cagctccaagagtttatattagtgctacgtggttgtgaatcaatggcccaattatgttcc
tctcttagtgttattttggaaaatgttgaatctagagtccttcatcatttgttaacactt
ggtgtaggtctccctaacattgattcggttataaatcatttcaaggatgcttttgattgg
gtagaagccaatgattcaggacgtatcatacctcatgaaggagttgatctggagtatgac
tctgcctgtaaaaaagttaaggaggttgagtctagtttaacaaaacacctcaagaatcag
caaaaattacttggagatgcatcaattacatatgtcacaattggaaaagaggcatatctc
ttagaagtaccagaaagtttgcgcgagagaattcctcgtgactatgagttaagatcatct
aaaaagggcttctttaggtattggactccaagtatcaagaagttgttgggagagctttca
caagctgagtctgaaaaggaatccatgctgaaaagcattcttcagaggttgattggacgt
ttctgtgagcatcataataagtggaggcaattagtttctgctactgcagagttggatgtt
ttgatcggtctagcaattgcaagtgaatattatgaagggccaacaagccgaccaattata
ttagactcgtcaagttcggatgaagtgccgtgcttttctgcaaaaagtttaggacatcct
gttcttagaagtgattctttaggcaatggtacctttgttcccaatgaaattatgattggt
ggttctggtcatcctagcttcatccttctcactggtcctaacatgggggggaaatcaact
cttcttcgccaagtttgcttggctgtgattttggcccaggtaggggcagatgtccctgca
gacagttttgagttgtcacctgtggaccgaatctttgttcggatgggtgccaaagatcat
atcatggcaggccaaagtacatttttaactgaactctcagaaactgcattaatgctgtct
tctgcaactcgtaattcattggtggcattggatgaacttggacgtggaacatcaacttca
gatgggcaagcgattgcgtatgttgaatcagttctacaacattttgtccacaaggtgcag
tgtcgaggaatgttttctactcattatcaccgattagctgtagactatcagaatgatcct
aaggttttgctttgtcatatgggatgccgagttgggaatggagttggagatgtggaagaa
gttacatttctttataggttgacacctggtgcatgccctaaaagctatggtgttaatgtt
gcacggttagctggacttcccgaatctgtacttcaaaaagctgctgctaagtccagagaa
tttgagactacatatggtaaacacctgaagacatttgaagataacttgaataatcaaagt
tggattggggaaatggtagaatttgtcagaaagtttatagacattacagaaaattttagt
tgcaacaagtctccggagagcactggtgccagcttcccgactgaacttcaacatagagca
caaatacttctacagaaaatttga
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