Quercus lobata (valley oak): 115971927
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Entry
115971927 CDS
T07350
Name
(RefSeq) WD repeat-containing protein ATCSA-1 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03420
Nucleotide excision repair
qlo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115971927
09124 Replication and repair
03420 Nucleotide excision repair
115971927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
qlo04121
]
115971927
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115971927
Ubiquitin system [BR:
qlo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
115971927
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
115971927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML_2
EIF3I
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_EML
Beta-prop_TEP1_C
ANAPC4_WD40
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_SPT8
WD_LRWD1
Beta-prop_Nup120_160
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
WD40_RFWD3
Motif
Other DBs
NCBI-GeneID:
115971927
NCBI-ProteinID:
XP_030947892
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All DBs
Position
12:complement(38084798..38091403)
Genome browser
AA seq
450 aa
AA seq
DB search
MWKEIGDRERGILRPKSFTTRIKSNRIRTLQISNHKDIVSPHRASINSLQVDLTEGRYLL
SGAADASAAVYDVQRATDYEAGGLIAKHKCLFVVDKQHEHGHKYAISSAIWYPVDTGLFI
TGSHDHHINVWDTNTTQVVMNFKMPGKVYRTAMSSLATTHMLIAAGTEDVQVRLCDIASG
AFSHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSHSQLGRRP
TIPEHSATNKALTSKSLSSGQNLNAKPRAQQRKLANGNGTKQSPVGRMPAKGSLRQRLHP
GMLSSLDRATAHYGAVTGLKATEDGMYLLSAGSDSRLRLWDVESGCNTLVNFETVRLQAG
KPIQLATSQDSDLVFVPCMTAVKAFDVWSGNTSQTFRGHYEYVNSCWFSSQEQELYTGGN
DKQILVWSPSRLIADEMDEGPAQDRDNWSD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaggagatcggagacagagaaaggggcatacttcgcccaaaatccttcactact
cgcattaagtccaatcgaattcgcactctccaaatttctaatcacaaagatatcgtctct
cctcaccgagcctccatcaactctcttcaggttgatttgacagagggacgatatttgtta
tctggagcggcagatgcttcagcagctgtttatgatgttcaacgggccacggattacgag
gctgggggtctcatagcaaagcacaagtgcctatttgttgttgacaagcaacatgaacac
gggcataaatatgccatatcctcggccatatggtatcctgttgacactggcctattcatc
acaggttcgcatgatcatcacataaatgtctgggatacaaataccacacaggtggtgatg
aattttaaaatgcctggaaaggtttatagaactgccatgtcctcattggcaacaactcac
atgctaattgctgctggaactgaagatgttcaagttcggctttgtgatatcgcttcaggg
gcattctctcatacactatctggtcaccgtgacggggtgatgacggtggagtggtcaact
tctagtgagtgggttttggttactggaggatgtgatggtgcaatacggttttgggacatc
agacgtgctggatgttttcttgttttagaccagtctcattctcagcttgggagacgccca
actatccctgaacactctgccactaataaggctttaacatctaagtccctatcatctggc
caaaatttgaatgcaaaaccgcgggcacagcaaaggaagcttgctaatgggaatggtaca
aaacagtcacccgttggtagaatgccagctaaaggatctttgagacagagattgcatcca
gggatgttgtctagtctggatcgtgccactgctcattatggtgctgttacagggttaaaa
gcaaccgaagatggcatgtatcttctaagtgcaggttctgactcaagattaaggttgtgg
gatgttgaatctggttgcaatacacttgtgaactttgaaactgtgcgcctacaagcaggc
aagccaatacagttggcgacatctcaggattctgaccttgtttttgttccatgcatgaca
gctgtgaaagcatttgatgtatggtcaggcaatacatcccagacatttcgtggacactat
gaatatgtgaactcgtgctggtttagttcacaggaacaggaattatacacaggtggaaat
gataaacaaattcttgtatggtcaccatccaggttgattgctgatgaaatggatgaagga
cctgctcaggatcgggataactggagtgattga
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