Quercus lobata (valley oak): 115971930
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Entry
115971930 CDS
T07350
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03022
Basal transcription factors
qlo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115971930
09124 Replication and repair
03420 Nucleotide excision repair
115971930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115971930
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115971930
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
115971930
Transcription machinery [BR:
qlo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
115971930
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
115971930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
115971930
NCBI-ProteinID:
XP_030947895
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All DBs
Position
12:complement(32406468..32414055)
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AA seq
764 aa
AA seq
DB search
MGHGEKGRPNKKHKSSAKEDHRIIVEDEDAYYGEEVDDDNRDGEKKRDFTKLELKPDHAN
RPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLET
ETIIAVLNKLSKTKLPKEMIDFIHASTANYGKVKLVLKKNRYFVESPFPEVLKKLLKDEA
ISKARINAEVSNGSDGFTISKAKGEIGTGHEDLLSGAEVAAAAEEKETHAFEVDPAQVEN
VKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGI
IVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFRLWSTIREDQICRFTSDSK
ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS
ITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTK
EFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMK
LRKPMIYGATSHVERTKILEAFKTSKEVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRR
QEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFK
VITSLPPSDTGADLSYHSLQDQLALLSKVLSAGDDAVGLEQLEEDADDIALHKARRFMGS
MSAMSGANGMVYMEYSTGRKMQGQLKGKPKDPAKRHHLFKRRFT
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgggacacggtgaaaaaggccgacccaacaaaaagcacaaatcttcagccaaggaagat
cacaggatcattgttgaagatgaagatgcatattatggcgaagaagtcgacgatgataac
cgcgatggtgagaaaaagagagactttaccaaattagagttgaaaccggatcacgctaat
aggcctttgtgggcttgcgcggatggccgtattttcctcgaaacattttcgcctttgtat
aaacaagcttatgattttctcattgctatagctgaacccgtttgcaggcccgagtcgatg
catgagtacaacctgacccctcattcgttgtatgccgcggtgtctgttggtcttgaaact
gaaactatcatagctgttttgaataaactgtcaaagacaaagctgcctaaggaaatgatt
gatttcatacatgcttccacggccaattatggcaaagtgaagctcgtgctaaagaagaat
aggtactttgtggaatctccatttcctgaggtattgaagaagttgcttaaggatgaagcc
atatccaaagcaaggattaatgctgaggtttcaaatggaagtgatggctttacaatcagc
aaagcaaagggtgaaattggaactggtcatgaggatttgcttagtggagcagaagtggca
gctgcagcagaagaaaaagaaactcatgcatttgaggttgaccctgctcaggttgagaat
gtaaagcaacgttgcttgccaaatgctttaaattaccccatgttggaggagtatgacttc
agaaatgataccgtcaaccctgacctcgatatggaattgaagcctcatgcacaaccacgg
ccatatcaggaaaagagtcttagtaaaatgtttggaaatggtagagcaagatctggcatc
atagtgctaccttgtggtgctggaaagtctctagttggtgtctctgcagcttgccgaata
aaaaaaagctgcctttgcttagcaacaaatgctgtttctgtggatcagtgggctttccag
ttcaggctatggtcaaccatccgagaagatcaaatctgtcgtttcacatccgatagcaaa
gaaagattccgcggtaatgctggggtggttgtgacaacatataacatggttgcttttggt
ggtaaacggtctgaagaatctgaaaagattattgaagagataagaaatagagaatggggt
ttgcttctcatggatgaggtgcatgtggttcctgctcacatgtttcgaaaggtcattagt
atcactaaatctcactgcaaacttgggctcactgccactcttgttagagaggatgaaagg
attaccgatctaaactttcttattgggccgaaattgtatgaagcaaactggttggatcta
gtaaaaggtggatttattgcaaatgtacagtgtgctgaagtctggtgtccaatgacaaag
gagttttttgctgaatatttgaagaaagaaaactccaagaaaaagcaggcactctatgtg
atgaacccaaataagttcagggcatgtgagtttcttataaggtttcatgaacagcagcgt
ggcgataaaataattgtctttgctgacaatctttttgcactcacagagtatgcgatgaaa
ctacgcaaacctatgatctatggtgctaccagccatgttgagaggacaaaaattcttgaa
gctttcaaaactagcaaggaagtaaacacagttttcctgtccaaggtgggtgataattcg
atagatattcctgaggcgaatgttatcattcagatttcttcacatgctggttcaagacgt
caagaagcccaacgtctgggtcgtattcttagggctaagggtaaacttcaagataggatg
gcgggaggtaaagaggagtacaatgcatttttctattcccttgtgtcaacagatacacag
gagatgtactactctaccaaaaggcagcagtttttgattgatcaaggttatagctttaag
gtaataacaagcttgcctccatctgatacgggagctgatttgagttaccacagtttacaa
gatcaattggcactactttccaaggtgttgagcgctggcgatgatgcagttggtttagag
caattagaagaagatgcagatgacatagcgcttcataaagcccgtcgttttatgggatcc
atgagtgctatgtcaggtgcaaatgggatggtttacatggagtacagtactgggcgaaaa
atgcaaggccagttgaagggtaagcccaaggatccagccaagcgacatcacctgttcaaa
aggcgctttacttga
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