Quercus lobata (valley oak): 115971962 Help Entry 115971962         CDS       T07350                                  Name (RefSeq) symplekin isoform X1   KO K06100   symplekin Organism qlo  Quercus lobata (valley oak) Pathway qlo03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:qlo00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     115971962  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:qlo03021]     115971962    03019 Messenger RNA biogenesis [BR:qlo03019]     115971962 Transcription machinery [BR:qlo03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      115971962 Messenger RNA biogenesis [BR:qlo03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      115971962     U7-dependent histone pre-mRNA processing factors      115971962 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N Motif Other DBs NCBI-GeneID:  115971962 NCBI-ProteinID:  XP_030947949 LinkDB All DBs Position 12:40223515..40256513 Genome browser AA seq 1336 aa AA seqDB search MAGAPPTDQALSLLAAANNHGDLAVKMSSLKQAKDILLSIEPSLAAELFPYLVELQSSPE SLVRKSLLDAIEEIGLKAMEHSSVFMPVLLALLKDVEPTVARQSIVIGTKFFCSVLEELA LQFHRRGKIERWLEELWMWIAKFKDAVFAIALEPGSVGTRLLALKFLETYVLLFTSDTDD FENPVTEASRQAFNISWLVGGHPVLDPVGLVSEANRTLDVLLNLLRSSNSLPGSLTITVV NCLTAIARKRPLHYSTVLSALLDFDPDFETVKGYHVASVQYSLRTALLGFLRCTHPAIIE SRERLLRALRAMNAGDAADQVIRQVDKMIKNTERASRDARLGKEDQLSSQLPVSGDLLKR RFMTLDNEEPVNGHEVASKRIRYGPDSQSALAVQVNDSGQDSVPVNGVSPVLDGQLTPVE QMIAMIGALLAEGERGAESLEILISKIHPDLLADIVITNMKHLPKTTPPLTRLGNLSATR QMGSLSSPTQVVSISALTSSVESPDVSAQAALSSTTATNSSLSDTPPVNTLPADSKRDPR RDPRRLDPRRVTVPAGVPSIPTAEDTGALQSEFDANIYLSKHVSLPVVNTHENPSTTLIS KIKSEDKILESPLVSSTDQPTPKEDILDRAEEIDLIPEVDPSSDPAPSPVDKVDEDSVAM KFSDDVVTNGVDTPSFLESDQHSPTVSNASEDNCQDLPLLPSYVELTQEQERSLRKLAIE QIIESYKHSCGTDCSEIRMALLARLVAQIGADDDIVMMLKKHVVVEYQRQKGHELILNVL YHLHTLMILDPVENSSVAAVVYEKLLLAVAKSLLDSFPASDKSFSKLFGEVPLLPDSALK LLDELCYADVTDLRGKDVRDVERVTQGLGAVWILILGRPLNRQSCLDIALKCAVHSQDEI RARAIRLVANKLYQLSYISDSIEQFARNMLLAAVDQHVSDIELSQSGFSKQRVEGEVESQ ETSTSGSQVSEPGTSENDSVRSAQPLVRNTSMSLHEAQRLISLFFALCTKKPNLLQLVFN NYCQAPKSVKQAFHRHIPILIRSLGSSCSELLHIISDPPQGSENLLTLVLEILTQETTPS SDLIATVKHLYETKLKDVTILIPMLSSLSKNEVLPIFPRLVELPLEKFQTALAHILQGSA HMGPALTPVEVLVAIHHIVPEKDGLALKKITDVCSACFEQRTVFTQQVLAKALNHMVDQT PLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVTRQVWRMPKLWVGFLKCVSQTQPHSFDV LLQLPPPQLESALSKYSNLRGPLTAHASQPSIRSSVPRSMLAVLGIANETHMQQPYLPSS LHSADSSSSVRGATST NT seq 4011 nt NT seq  +upstreamnt  +downstreamnt atggcgggagctcctccgacggaccaggctctctctctcctcgccgccgccaacaaccac ggcgatttggcggtgaagatgtcttctctaaagcaagccaaagatattctattatccata gaaccgtctttggccgccgagctttttccttacttggtcgagctccagtcctcccccgaa tccctcgtccgcaaatcgctcttagacgcgattgaagagattgggttgaaagcaatggag cattcttctgtgtttatgcctgttttattggcacttttaaaagacgttgagccgactgtc gcaagacaatctatagttattggcacaaaattcttttgtagtgttctggaggagttggca ttgcagtttcaccggcgtggtaaaattgagaggtggcttgaagagctttggatgtggatt gctaagttcaaggatgctgtctttgccattgcgttggagcccggttctgttgggacaagg ttgctggctttgaaatttttggaaacatatgttttactttttacatctgacaccgatgat tttgaaaaccctgtcacagaagctagcagacaggcttttaatatatcatggctggttggt ggtcaccctgttctggacccagttggacttgtgtcagaagcaaacagaactcttgatgtt ctcttaaatctgttgcggtcttctaatagcctccctggttcattgacaataactgttgtc aactgtcttacagccatagcaaggaagaggcctctccactatagtactgttctttctgct ctgcttgattttgatccagactttgagacggtcaaaggatatcatgttgctagtgtccag tattcattaagaactgcacttttgggattcctaaggtgtacacatccagccatcatagag tcaagggaaagattgcttagggctctccgtgctatgaatgctggggatgctgctgatcag gttatccggcaggttgataaaatgattaaaaacactgagcgtgcttcacgtgatgctcgg ttaggcaaggaggatcaattatcaagccagctgcctgtatcaggtgatttgttaaaaaga aggtttatgactctggacaatgaagagccagttaatggtcatgaggtggcttccaagcga atccgttatggtcctgacagccagtcagctttggcagttcaagtaaatgattctgggcag gattctgttcctgttaatggagtatctcctgtgttggatggtcaactgacccctgtggaa caaatgattgccatgattggtgctttgcttgcagaaggagaaagaggtgctgaatcactt gaaatccttatatcaaaaatccatccggatctgttggctgatattgtcataacaaatatg aagcacttgcctaagacgactccaccgttaaccaggcttgggaacttgtcagcaactcga caaatgggttctctaagtagcccaacccaggttgtttcaatatctgctttaacaagttct gttgaatctccagatgtcagtgcacaagcagctctttcttcaactactgcaactaattca tcattgtctgatacacctccagtcaataccctccctgctgattctaagcgtgatcctcgc agggatccccgtcgcttggatccacgccgtgtaacagtccctgctggggtaccttccata cctactgcagaggacactggagctctgcaatctgagtttgacgctaatatttatttgagt aaacatgtttcacttcctgttgtgaacactcatgaaaatccttccacgactctcatttcc aagatcaaaagtgaagataagattttggaaagtcctttggtttctagcactgatcaacca actcccaaagaggacattctggatagagccgaggaaattgacctgatcccagaggttgat ccttcttcagatcctgcaccttctcctgttgacaaagttgatgaggactcggttgcaatg aagttttcagatgatgtagtgacaaatggggttgatacaccatcttttctagaatctgat cagcattctccaactgtttcaaatgcatctgaagataactgtcaagatttaccgctgctt ccatcatatgtggagctaacacaagaacaggaaagaagtttgagaaaattggcaattgaa caaattattgaatcatacaagcattcatgtgggactgattgtagtgagattcgtatggca ttacttgctcgattggttgctcagattggtgctgatgatgacattgttatgatgctgaaa aaacatgttgttgtggaataccagagacaaaaggggcatgagcttatattgaatgtcttg tatcatctgcacactctcatgattttggatcctgtggaaaactcttcagttgccgctgtt gtgtacgaaaagctcctcttggcagtggccaaatctctgctggactcttttccagcttct gacaagtcctttagtaaactttttggtgaagtcccacttttgcctgactcagccttgaaa ctattagatgaactctgttacgctgatgttactgatctccgtggaaaagatgtacgtgat gttgagcgtgttactcagggccttggggctgtctggattttgattttggggcgcccactt aatcggcaatcctgcttagatatagctttgaagtgtgctgtccattcacaagatgagatt cgagccagagcaatccggctggtggcaaacaaactctatcagcttagctacatatcagac agtatagagcaatttgcaagaaatatgttgctggctgctgtagatcagcatgtttcagat atagaactttcacagtctgggttctccaagcaaagagtcgaaggggaggttgaaagccag gaaacatccactagtggttctcaggtttcagagcctggaacttctgagaatgactctgta aggagtgcacaaccattagtgaggaacacttctatgtcattgcatgaagctcaacgactc atttcattgttttttgctttatgtacaaagaaacccaatcttcttcaacttgtgtttaat aattactgtcaagccccaaaatctgtaaagcaggctttccatcgccatatccctattctt ataaggtccctagggtcatcttgttctgaattgctccatataatatcagatccacctcaa gggagtgaaaatctgttgacactggtgttggaaatattgactcaagagacgacgccttct tctgatctgatagccactgttaaacatttatatgaaactaaattaaaggatgtcacaatt cttattccaatgttgtcttcactttccaaaaatgaggttttacctattttccctcggctt gttgaacttccattagaaaagttccagacggcacttgctcacatactgcagggttcagct catatgggtccagctttaacacctgtggaagtgttggttgccatccatcacattgttcct gagaaagatggccttgcacttaaaaagattacagatgtttgctcagcctgttttgagcaa cgaacagttttcacacagcaggtcttggcaaaggcattgaaccatatggttgatcaaact cctctacctcttcttttcatgagaactgtgattcaggcaattgatgcttttcctacactg gttgattttgttatggagattctttccaaacttgtgactagacaggtgtggagaatgcca aaactgtgggttggctttctgaaatgtgtgtctcagacgcagccacattcttttgatgta ttgttacagttaccaccaccacaacttgaaagcgctctgagcaaatattctaaccttaga ggtccacttactgctcatgcaagccagccaagtattagaagttcagttcctagatcaatg ttagcggttcttggtattgcaaatgaaacccatatgcaacaaccttatctcccatcatct ttgcactctgctgactcaagttcttcagttcgaggagcaacatcaacgtga

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