Quercus lobata (valley oak): 115972468
Help
Entry
115972468 CDS
T07350
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
115972468
Enzymes [BR:
qlo01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
115972468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
EMC7_beta-sandw
CarbopepD_reg_2
CarboxypepD_reg
RicinB_lectin_2
DUF150_C
Motif
Other DBs
NCBI-GeneID:
115972468
NCBI-ProteinID:
XP_030948626
LinkDB
All DBs
Position
12:complement(39681382..39696612)
Genome browser
AA seq
713 aa
AA seq
DB search
MNCLSFSESSYLSLAYSHFMLYILLKLTTQNQIDLSMVPKQFPEIAESSLNMPYPSVRLQ
IQDQYVVMDNGIVQVNLSNPGGMVTGIQYNGIDNLLEVLNNETDRGYWDVVWNFPGSNGT
KGYPGNPSKKFKGYLDRMEGTNLTVVVENEEKVELSFTRMWDPSLKRNPVPLNIDKRFVM
LRGSSGFYSYAIYEHLAESPAFDLDNTRIALKLRKDKFRYMAIADKRQRFMPLPEDRLPP
RGQTLAYPEAVRLVNPAEPEFTGEVDDKYEYSSEAKDIRVHGWVSADPPMGFWQITPSYE
FRSAGPSKQFLNSHDGPTSLSVFHSTHYAGEDLIMKFGPNEPWKKVYGPVFMYLNSLTNE
EGPNSLWEDAKKQMMNEVQTWPYDFPASVDFPSSDQRGNVCGRLLVHDRYISENPTPGIC
SYIGLALPGDVGSWQRECKGYQFWTIANEDGYFSIKNVHTGVYNLYAWVPGVIGDYRYDV
VITITSGLSIDVGNLVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPLYINKLYVNHPDSR
FRQYGLWERYAELYPDGDLVYMIGNSDYRKDWFFAQVTSSVPFLRCRKTNNNTYEGTTWQ
IKFKLDNVDESATYKLRVALATAHSSELQVRINDPMANPLFTSGVIGKDNTIARHGIHGL
YWLFEVKVPGTHVVEGNNTIFLTQPLSKSPFQGIMYDYIRLEGPSPSNSSKNS
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgaattgtctctccttctcagaatcatcatatttgagtttagcttacagtcattttatg
ctttacattttactcaaactcaccacccaaaaccagattgatttatccatggtcccaaag
cagttcccggagatagcagagagcagtctcaatatgccatacccaagtgtgcgactacaa
attcaagatcaatatgtggttatggataatggaatagtacaagttaacctatcaaatccg
ggaggaatggtcactggaatacaatataatggcattgacaatttgcttgaggttcttaac
aacgaaactgatagaggatactgggatgtggtatggaactttcctggaagtaacggcaca
aagggttaccctggtaacccatcaaaaaaatttaagggttatcttgataggatggaaggg
acaaatttgacggtagttgtggaaaatgaagaaaaagtagagctgtcattcactagaatg
tgggatccctcacttaagcgcaaccctgttccattgaatatagacaaaaggttcgtgatg
cttcgtggttcctcaggattctactcctatgccatttatgaacacttggcagaatcacca
gctttcgatttggacaatactaggattgcattaaaacttaggaaagacaagtttcgttat
atggctatagcagacaagaggcaaagattcatgcccttgcctgaagaccggttaccacct
agaggccaaaccctggcctacccagaagcagtacgacttgtcaatcccgcggagccagaa
tttacaggagaggtggatgacaagtacgaatactcaagcgaggccaaggatatcagagtt
catgggtgggtaagcgcggacccacccatggggttttggcaaatcacacccagctatgag
ttccgatctgctggaccctccaaacaattccttaactcccacgacggtccaaccagcctt
tcagtatttcatagcacacactatgcaggagaggatttaataatgaaatttggacctaat
gagccatggaagaaagtttacggccccgtttttatgtatcttaattctttgactaatgag
gagggcccgaattcgctctgggaggatgctaaaaaacagatgatgaatgaagttcaaacc
tggccctatgattttccagcttcagtggactttccatcatcagatcaacggggtaatgtc
tgtggtcgattactagtccatgataggtatattagtgagaatcctacacctggaatttgt
tcttatattggattggcattgccaggggatgttggatcttggcaaagagaatgtaagggt
taccaattttggaccatagctaatgaggatggctatttcagtattaaaaatgtacatact
ggtgtctataatttgtatgcatgggtccctggtgtcatcggtgattacagatacgatgtt
gtcattaccataacttcaggtctcagcattgatgttggtaatcttgtttatgagcctcca
agagatgggccaacattgtgggaaataggcatcccagatcgcaccgctgctgaattctat
gttcctgatcctaatcctttgtatattaacaaactttacgtcaatcatcctgatagcaga
tttaggcagtatggattatgggagaggtatgcagaactatatcctgatggagacttggtt
tacatgattgggaatagtgactatagaaaagattggttctttgctcaagttactagctct
gtgccatttttgcgatgcaggaagacaaataataacacatatgaaggaactacatggcaa
attaagttcaaacttgacaatgttgatgagagtgcaacctataaattacgagtagcactt
gcaactgcacattcttccgaattgcaagttcgaattaatgatccaatggcaaatcctctc
tttacaagtggagttattggtaaggataacacaattgcgaggcatggaattcatgggctc
tactggctgtttgaagttaaggtaccaggaactcacgtagtggagggaaataataccatt
tttctaacacaaccattaagtaaaagccctttccagggaatcatgtatgactacattcgt
ttggaaggtccctctccttcaaattctagcaagaattcttga
DBGET
integrated database retrieval system
