Quercus lobata (valley oak): 115972616
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Entry
115972616 CDS
T07350
Name
(RefSeq) probable small nuclear ribonucleoprotein F
KO
K11098
small nuclear ribonucleoprotein F
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115972616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115972616
03041 Spliceosome [BR:
qlo03041
]
115972616
03032 DNA replication proteins [BR:
qlo03032
]
115972616
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
115972616
Spliceosome [BR:
qlo03041
]
Complex A
U1 snRNP components
Sm proteins
115972616
U2 snRNP components
115972616
Complex B
U1 snRNP components
115972616
U4/U6.U5 tri-snRNP components
115972616
Complex C
U2 snRNP components
115972616
DNA replication proteins [BR:
qlo03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
115972616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF6454
Motif
Other DBs
NCBI-GeneID:
115972616
NCBI-ProteinID:
XP_030948807
LinkDB
All DBs
Position
12:3634132..3638458
Genome browser
AA seq
88 aa
AA seq
DB search
MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLASVDSYMNLQLANTEEYIDGQFTGNL
GEILIRCNNVLYLRGVPEDEEIEETDRD
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaataccagttaacccgaaaccattcttgaacaatttgaccgggaagcctgtc
attgtcaaactcaagtggggaatggagtacaaaggttttcttgcctcagtggattcatac
atgaacttgcagctggctaacaccgaagaatacattgatggacaattcactggaaatctg
ggagagattttgatcagatgtaacaatgttctttatcttcgtggagtaccagaggatgag
gaaattgaagaaactgatcgagactaa
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integrated database retrieval system
