Quercus lobata (valley oak): 115974153
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Entry
115974153 CDS
T07350
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03015
mRNA surveillance pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115974153
09123 Folding, sorting and degradation
03018 RNA degradation
115974153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115974153
03041 Spliceosome [BR:
qlo03041
]
115974153
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115974153
mRNA cycle factors
Stress granule specific factors
115974153
Spliceosome [BR:
qlo03041
]
Complex C
Other components
Complex C specific factors
115974153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_7
RRM_RdRP1_2
RRM_3
SET_assoc
RBD_DGKtheta
GH97_C
Motif
Other DBs
NCBI-GeneID:
115974153
NCBI-ProteinID:
XP_030950233
UniProt:
A0A7N2KRU2
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All DBs
Position
2:4272927..4283168
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AA seq
649 aa
AA seq
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MAQIQVPVSGQNGVVSGAGAGANQFVTTSLYVGDLDVNVSDSQLYDLFSQVGQVVSVRVC
RDLSNRRSLGYGYVNYSNPQDAARSLNLLNFTPLNNKPIRIMYSHRDPSIRKSGTANIFI
KNLDKAIDHKALHDTFSSFGSILSCKVATDANGQSKGYGFVQFESEESAQNAIDKLNGML
INDKQVYVGHFLRKQERDGAFNTTKFNNVFVKNLSEATTDEDLKNIFGEFGAITSAVVMR
DADGRSKCFGFVNFESADDAANAVEALNGRKHDDKEWYVGKAQKKSERELELKGRFEQSM
KETVDKYQGLNLYVKNLDDSINDEKLQDLFAEFGTITSCKVMRDPNGISRGSGFVAFSTS
EEASRALDAMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPIAIAPSMAPRVPIYPP
GAPGLGQQFLYGQAPPALIPPQAGFGYQQQLVPGMRPGGAPMPNFFVPMPQQGQQGQRPG
GRRGAGPVQQTQQPMALMQQQMIPRGRVYRYPPGRNMPDVPMQGMAGGMLSVPYDISGVP
MRDAALGQPMPIQALATALANAKPEQQRTMLGEALYPLVDQLEHESAAKVTGMLLEMDQT
EVLHLLESPDALKAKVAEAMEVLRNVAQQQAKGPADQLAALSLNDNLIT
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagattcaggttcctgtgtcgggtcagaacggtgtcgtttctggtgctggagcc
ggagcgaaccagttcgttacgacgtcgctttacgttggagatcttgacgtgaacgtctcg
gactcgcagctctacgatctgtttagccaggtcggtcaggtcgtttcggttcgggtctgt
agggacttgagcaatcggcgatctcttggctatggttacgttaactatagcaaccctcag
gacgcggcgaggtcattgaacttactgaatttcactccactgaacaacaagcccatcaga
atcatgtattctcatcgggatcctagcatacgcaagagtggtaccgcaaatatatttatc
aagaatctggacaaggcaattgaccacaaagcattacatgatactttttcttcttttgga
agtattctctcttgcaaggtagctactgatgccaatggccagtccaaaggctacggtttt
gttcaatttgaaagtgaagagtctgcacagaatgccatagacaagttaaatggcatgctg
atcaatgacaaacaagtgtatgttggacactttcttcgtaagcaggaaagagatggtgct
tttaatacaaccaaatttaataatgtttttgtgaaaaatctatcggaagcgacaactgat
gaagatttgaagaatatttttggtgaatttggagcaattaccagtgctgtagtgatgagg
gatgctgatggaagatcaaagtgctttggttttgtcaactttgaaagtgcagatgacgct
gctaatgcggttgaggcactgaatggtaggaaacatgatgacaaggaatggtatgttgga
aaggcacaaaaaaaatctgagagagagcttgaattgaaaggaagatttgagcagagtatg
aaggaaacggttgacaaatatcaagggttgaatctgtatgttaagaatttggatgatagt
atcaatgatgaaaaactacaggatttgtttgcagagtttggtacaatcacttcatgcaag
gtcatgcgtgatcccaatggaattagtagaggttctggatttgttgctttctcaacttct
gaagaagcttctcgagctcttgatgccatgaatggtaaaatggttgtcagcaaacctctc
tatgttgcacttgcacagcggaaagaagagagaagggcgaggttgcaggctcaattttca
caaatgaggccaattgctatagcaccttctatggctccacgtgtgccaatttaccctcct
ggtgctccgggtcttggtcaacaatttttgtatgggcaagcacctccggctctaattcct
ccacaagctgggtttggttaccagcaacaacttgttcctggaatgaggcctggaggagct
ccaatgccaaatttctttgttcctatgcctcagcagggtcagcagggccagcgcccaggt
ggacgacgtggagctggtcctgtgcaacaaacccaacagcctatggcactgatgcaacag
cagatgattcctaggggacgtgtctatcgttatccaccagggcgcaacatgccagatgtt
ccaatgcaaggtatggctggaggcatgctatcagttccttacgacattagtggtgtgcca
atgcgagatgctgcactgggacagcccatgcccattcaggctttggctacagctcttgca
aatgctaaacctgagcagcagagaacgatgctgggtgaagccttataccctctagtggat
cagctggagcatgaatcagcagctaaggttactggtatgcttctggagatggaccagact
gaggtgctgcatttgcttgagtcaccggatgctttgaaggcgaaagttgcagaggctatg
gaggtcctgaggaatgttgcacagcaacaggcaaaaggccctgctgatcagctagctgca
ttgtctttgaatgacaatcttatcacttga
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