Quercus lobata (valley oak): 115974518
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Entry
115974518 CDS
T07350
Name
(RefSeq) vacuolar protein sorting-associated protein 35B-like isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115974518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
qlo04131
]
115974518
Membrane trafficking [BR:
qlo04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
115974518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
115974518
NCBI-ProteinID:
XP_030950778
UniProt:
A0A7N2QYF9
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All DBs
Position
2:12185966..12197309
Genome browser
AA seq
790 aa
AA seq
DB search
MMINGIEDEDKWLAEGIAAIQHNAFYMHRALDANNLREALKYSAQMLSELRTSKLSPHKY
YELYMRAFDELRKLEMFFKDESRHGVSIVDLYELVQHAGNILPRMYLLCTVGSVYIKSKE
APAKDVLKDLVEMCRGVQHPIRGLFLRSYLAQISRDKLPDIGSEYEGDADSVMDSVEFVL
QNFTEMNKLWVRLQHQGPGRVREKLEKERSELRDLVGKNLHVLGQIEGVDLGMYKDAVLP
RVLEQIVNCSDDLAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDVKTVLSQLME
RLSNYAASSTDVLPEFLQVEAFAKLSNAIGRVIEAQVNMPIVGAITLYVSLLTFTLRVHP
DRLDYVDQVLGACVKKLSGKPKLEDQRAKKQVVALLSAPLEKYNDAVMALTLSNYPRVMD
HLDNETNKVMAMVIIESIMKNYTCISTAHQVEVLFELIKGLIKDLDGTAADELDEEDFNE
EQNSVARLIHMLYNDDPEELLKIICTVKKSIMNGGPRRLPFTVPPLIFSALRLIRQLQGQ
DGDVAGEEVPATPKKIFQILNEMIESLSTVPSPELALRLYLQCAEAANDCGLEPVAYEFF
TQAFVLYEEEIADSKAQVTAIHLIIGTLQRLNVFGVENRDTLTHKATGYSAKLLKKPDQC
RAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVTRGNSGPVTLFVEILN
KYLYFFEKGNPQITSAAIQGLIELITTEMQSESTAPNAASDAFFASTLRYIQFQKQKGGA
MGEKYDSVKV
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgatgataaacggaattgaggacgaagataaatggctcgccgaagggatcgccgccatt
caacacaacgccttctatatgcaccgcgctctcgacgccaataatctccgagaagcccta
aagtactcggctcagatgctatcggagcttcgaacttcgaaactctcacctcacaaatac
tacgaactctacatgcgagcgttcgatgaattgaggaagctggagatgttcttcaaagac
gaaagcaggcacggggtttcgattgtggatctctatgaacttgttcagcacgctggcaac
attttgcctagaatgtatctcctatgtacagtaggatctgtgtacatcaaatctaaggag
gctcctgctaaggatgtccttaaagatctcgtggaaatgtgtcgtggtgttcaacaccca
atccgtgggctctttttaagaagttatcttgctcaaatcagtagagataaattacctgat
attggttcagaatatgaaggagatgctgactctgtcatggattctgtagaatttgtgctc
cagaatttcactgagatgaataagctttgggtacgactgcagcatcagggacctggtcgg
gtgagagagaagctggaaaaggaaaggagcgagctccgtgatctggttgggaaaaatctc
catgtgctcggtcaaatagagggcgtggaccttggaatgtacaaagatgctgttcttccc
agagtcttagagcagattgtcaactgcagtgatgaccttgctcaatattatctgatggat
tgcataattcaggtctttcctgatgagtaccatttacagacccttgagacattattgggt
gcttgcccccagcttcagccaacagttgatgtcaagacagtgttatcgcaattaatggag
agattatcaaattatgctgcttcaagtacagatgtgttacctgaatttctgcaagtggaa
gcttttgcaaaattgagcaatgctattgggagggtgatagaagcacaggtcaacatgcct
attgttggagccataactttatatgtctctcttcttacatttactctccgtgttcatcct
gatcgacttgattatgtggatcaagtactgggagcatgtgttaagaaactctctggcaaa
ccaaaacttgaagaccaaagagcaaaaaaacaagtcgttgcgcttctgagtgctccactg
gagaaatacaatgatgctgtcatggccctgacactttctaattacccccgtgtgatggat
caccttgataatgaaacaaataaagtcatggcaatggttattattgaaagcatcatgaag
aattacacttgcatctctactgctcatcaggttgaggtgctgttcgaattaattaaaggg
ctcatcaaggacttggatggaactgctgcggatgagcttgatgaggaggattttaacgaa
gaacaaaattctgttgctcggctcattcacatgctttataatgatgacccagaggaattg
ttaaagatcatatgtaccgtgaagaagagtataatgaatggaggaccaagacgcctgcct
tttactgttcctcctcttatattttctgcactcaggttgataaggcaattacaaggtcag
gatggggacgtagcgggagaggaagtgcctgcaactccaaagaaaatttttcagatatta
aatgagatgattgaatctctttccactgttccatctcctgaactggcattaaggttgtac
ctgcaatgtgctgaggctgctaatgactgtggtcttgagcctgttgcttatgaatttttc
actcaggcatttgtcttatatgaagaagaaattgcggactccaaagcccaggtgactgca
atacatctgataattggaacccttcagaggttgaatgtatttggtgttgagaatagagat
actctaacacacaaggccacagggtattcagcaaagcttctaaagaaacctgatcagtgc
agagcggtttatgcatgttcacatcttttttgggttgatgatcaggatggaattaaggat
ggagaaagggtcctgctttgcttaaagcgtgccttgaggattgcaaatgctgctcaacag
atggccaatgttacacggggtaacagtgggccagtcacactctttgttgaaatactgaac
aagtacctttatttttttgagaagggaaacccccaaattacaagtgctgcaatccagggt
ctaatagaattaatcacaactgagatgcaaagcgaatctacagcccccaatgctgcttca
gatgctttctttgctagcacgctgcgttacatccagtttcagaaacagaaaggcggtgca
atgggagaaaaatatgattctgtcaaggtttga
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