Quercus lobata (valley oak): 115974660
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Entry
115974660 CDS
T07350
Name
(RefSeq) Fanconi anemia group J protein homolog isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03440
Homologous recombination
qlo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115974660
03460 Fanconi anemia pathway
115974660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115974660
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115974660
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
115974660
FA (Fanconi anemia) pathway
Downstream FA components
115974660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
Yippee-Mis18
Pex19
Motif
Other DBs
NCBI-GeneID:
115974660
NCBI-ProteinID:
XP_030950975
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Position
2:complement(14914197..14927946)
Genome browser
AA seq
1276 aa
AA seq
DB search
MVSATPTPPGPDPSIKSSKNVYHIGGIQVEFPYQPYGSQLAFMGRVISTLDRAQRENHCH
ALLESPTGTGKSLSLLCSTLAWQQSCKLKNQFANLTHSKPNPEAFTDPLAHGGGFVPEVE
PSGNAGPENLDPTQSAANNKNQKKKAAPTIYYASRTHSQISQVIREYRKTAYRVPMAVLA
SRKHYCTNKHIRGKDNIDEECKLLLRDREVGCPEFKNAHKVKGHPSLQKGGCHEAHDIED
LVRVGQVVKGCSYYAARSMADDAQLVFCPYSYVINPVIRGAMDVDIKEAIVILDEAHNIE
DIARDAGSVDLEEDILYKLQTELEHLCTVDVLTYQPLYEMTEDLISWIERRKSTLEKRDF
QHHISCWTGDKALRELQEANISQQCFPILLECATKAIKAATDLESDVARLSGMSVITLEG
LFSSLTYFFSRNGSHIYDYQLALQRCVKRDAGKVGNWTHTFSLWCLNPAVVFRDIADLSL
SVILTSGTLSPMNTFSSELGVQFGTCLEAPHVIDVESQVWSAIIPTGPGNYPLNASYKTA
DAYAFQDALGKSLEEIFNIVPGGCLVFFPSYKLMEKLCNRWSETGQWSQLTTKKSLFVEP
RGGSQDDFEPVLKGYYDSIRLGNKPAFGRKSRVKKTDLNHFNTVESPENLKKGAAFLAVF
RGKVSEGIDFSDDNARVVIIVGIPFPNMFDIQVSLKKKYNDTHKSSKGLLSGNEWYCNQA
FRALNQAAGRCIRHRFDYGAIILLDERYQEERNRAYVSKWLRKSIRQYDSFDSSKDRLKL
FFEDVKEWVGKNTVNVLQNFDIKEEKSESAIVVGQSKGLRRNENQKLNKSDHYGRKRISM
TKYDASLPLQKSQGNVKVQASLKMDEDTSNCIEYVDLECSFQKDTRCSEDFSMAFSVEDP
DVSIVKETPCSTSPGSLSKDENSCSTIIEDSTEFPDHVSVHSICLASEGKSLSGAQCSVV
VTPEKNITMNTYSSMPDMESSLNLSVNSHTQKRRKSMGTPLINLIEDEQSDAPNAITPVY
TGLTRSSMASKDANRRIEFGLESSCAEHKSKKSSVSRLLTKDNYVASCVPPISFVEKRLQ
ISCFLCKSPLGLPENHLYVMCLLTSSSKVHLASVLKEKLEPHDVNTPTSIQVVMTDILSV
HPQLYSRRSEGAPGQGVWCEEDGCVFNTIFCPFCSNPNSCLGVQIVATDASNVHLLNKIL
FYRAHLEIKNLETSSDKVSEEKNLLPASGSGMEKEAILNSIDKFSYSPQQQNSGGWRTTK
SKLKLPKKGLLSNSEG
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atggtctctgcaactccaactcctccaggtccagacccaagcatcaagagctctaaaaat
gtgtaccacatcggaggcatccaagtcgaattcccgtaccagccgtacgggtcgcagctc
gcgttcatgggtcgggtcatctcgactctagatcgagcccagagagagaaccactgtcac
gcgctcctcgagtccccgaccggtaccggaaaatcgctctcgcttctctgctccactctc
gcttggcagcagagctgtaaattgaagaaccagttcgccaatctcactcactccaagccc
aatcccgaggctttcaccgatcctctcgctcacggtggcggatttgttccagaagtggaa
ccctcaggtaatgcggggccggaaaatttggacccaactcaatctgcagcaaacaacaag
aatcaaaagaaaaaggcagcacccaccatatattatgcatcgaggacacattcacaaatt
tctcaagtaattcgtgaatatcgaaaaactgcttaccgggtcccgatggctgttttggcg
tctaggaagcactactgcaccaacaagcatatacgagggaaagataatattgatgaagaa
tgcaagttgcttttgagggatcgagaagtgggatgcccagaatttaaaaatgcacataaa
gtcaagggacatccatcactgcagaagggaggatgccatgaggctcatgatatagaagat
cttgtgagagttggacaagttgtgaaaggttgttcatattatgcagcacgttctatggca
gatgatgcacaattggttttctgtccatacagctacgtcattaatccagtcattcgagga
gcgatggatgtagatattaaagaagccattgtgattcttgatgaagcccacaacatagag
gatattgctcgagacgctggcagtgtggatcttgaagaagacattttgtacaaattgcag
acggaactagagcatctctgcacagtggatgttctaacttatcaacctttatatgaaatg
acagaggaccttataagttggattgagcggaggaaaagtacactagagaaacgtgacttc
cagcaccacatctcttgttggactggtgataaggctttaagagagctccaagaggctaat
atttcacagcagtgcttcccaatcttgctagaatgtgccacgaaggcaattaaagctgct
acagatttagagtcggatgtagcacgtttaagtggcatgtcagtaataactttggaaggg
ttattctcttctctaacttactttttctcaagaaatgggagtcacatttatgattatcag
cttgctttacaacgatgtgtcaaaagagatgctggaaaagttggcaattggacacatact
ttcagtttgtggtgcttgaatccagctgttgtttttagagacattgctgatctttctttg
tctgtcatattaacatctgggactttgtctccaatgaataccttttcatctgagcttggg
gttcagtttggaacttgtttggaagctccacatgtgattgatgttgagtcacaggtgtgg
tctgctataatacccactggtccaggtaattatccactgaatgcaagttataaaacagca
gatgcatatgcatttcaggatgcacttgggaaatctttagaggagatttttaacattgtt
ccaggaggttgtctagtgttcttcccaagttataagctgatggagaaactatgcaatcgt
tggtctgaaactggtcaatggtcacagctaactacaaaaaaatccctttttgttgagcca
agaggaggaagccaagatgattttgaacctgttttgaaaggttactatgactcaattcgt
ctaggcaataaacctgcttttgggagaaagagtcgggtaaagaaaacagaccttaatcac
ttcaacacggtcgagtccccagaaaatttaaagaaaggagctgcgtttctggcagttttc
cgaggaaaggtttcagaaggaattgacttctctgatgataatgcccgtgtggttataatt
gttggaattccttttcccaacatgtttgatattcaagtatcgttaaagaagaaatataat
gatacacataaatcatccaaaggccttctaagtgggaatgagtggtactgtaaccaagcc
ttccgagctctaaatcaagctgcaggacgttgtatacgacataggtttgattatggagcc
attatcctattagatgagcgctatcaggaagaaaggaatagagcatacgtatcaaagtgg
ctaaggaagtcaattagacaatatgacagctttgactcttcaaaagacagattaaaattg
tttttcgaagatgtgaaggagtgggttgggaagaatactgtaaatgtattacagaatttt
gacattaaagaggaaaagtctgaaagtgcgattgttgtgggtcaaagtaaagggcttaga
agaaatgaaaatcagaaactgaacaagtctgatcattatggacggaaaaggatttctatg
acaaagtatgatgcttcccttcctttgcagaaatctcaaggtaatgtcaaagttcaggca
tctctgaaaatggatgaggacactagcaactgtatagaatatgttgaccttgagtgcagt
tttcagaaagacacaaggtgctctgaggatttttccatggcattctctgttgaagatcca
gatgtatctattgtcaaagaaaccccatgctctactagtccaggatccttgtctaaggat
gaaaactcttgttcaaccataattgaggattctactgaatttccagatcatgtatcagtt
cattcaatctgtttagctagcgaagggaaatcactttctggtgcccagtgttcagtggta
gttactcctgaaaagaatatcactatgaacacctacagttctatgccagatatggaatca
tctttgaatttaagtgttaattctcatacccaaaaaaggagaaagtccatgggaactcca
cttattaaccttatagaagatgaacaatccgatgcccccaatgctataacccctgtctat
actggtttaacaagaagctcaatggctagcaaagatgcaaatcgcagaattgaatttggt
ttagagtctagttgtgcagaacacaaatctaagaagtccagtgtttctcgattgctcaca
aaggacaattatgttgcttcatgtgtgcctcctatttcttttgtggagaaaagattacaa
atttcttgttttctctgcaaaagccctttgggtcttcctgagaaccatctatatgtaatg
tgcctgttaacatcatcatcgaaagtccacctagcatctgttctaaaagagaaattggaa
cctcatgatgtgaatacacctacaagcatacaagttgtcatgactgacattttatctgtt
catccacagctctattccagaagatctgaaggtgctccgggacagggtgtttggtgtgaa
gaagatgggtgtgtattcaataccattttctgtcctttctgcagtaaccccaacagctgt
cttggtgtgcagattgtggctactgatgcatcaaatgttcatttacttaataagatattg
ttttaccgtgcgcatttggaaattaagaatcttgaaacatcaagtgacaaggtttcagag
gaaaagaatttgttgccagccagtggctcaggcatggaaaaagaagccatcttgaattcc
attgataaattctcttactccccacagcaacagaattcaggaggctggaggactacaaaa
tcgaagttaaaactaccaaagaaaggcttgctttctaattcagaaggttaa
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