Quercus lobata (valley oak): 115974718
Help
Entry
115974718 CDS
T07350
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115974718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qlo03041
]
115974718
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115974718
Spliceosome [BR:
qlo03041
]
Complex A
U2 snRNP components
U2 related factors
115974718
Complex B
115974718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
115974718
NCBI-ProteinID:
XP_030951067
UniProt:
A0A7N2KTF9
LinkDB
All DBs
Position
2:15956568..15962557
Genome browser
AA seq
1232 aa
AA seq
DB search
MDEGKHKSRREDSERSEVEDLKESKRSHRDRDRERDKERNGERHRDRDRDRVKKDRDSRR
SEREKSSESDDKERNGERHRERDREKKDRDSRRSEKEKSIESDEKERNGERHRDQEREKK
DRDSRRSEREKSSDSDDKHDRIREKHRDRDKDKDRTRSRDDDRERERAREKKRERDREER
EREREREREKEKRERAREKEREREREREKREREREERERERERERREREREREKERERER
RIRDREKHREADSDDGDDNHREHDRKRRRRDDDGYKDRDRERSNSRPRKHRADSEESPRK
RSTEDDSDKENKLTREEELKDEQRRLEEEMEKRRRRVQEWQETKRKNEEAEREKRGEANA
EEPMSGKTWTLEGESDDEEVPPMGKPETDMDMDENVNPTDNEVGDSMLVDSENGIASTSQ
NGADGDAGDEEIDPLDAFMNSMVLPEVEKLNNTSAPPNFDDMDVDSKNKPKKDELSNGEQ
PRKGSNKSMGRIMQGEDSESDYSDLENDEDPVQEEDDDEFMKRVKKTKAEKLSVVDHSKI
DYEPFRKNFYIEVKEIGKMTSEEVVAYRKELELKLHGKDVPKPIKTWHQTGLTSKILETI
KKLEYESPMPIQAQALPIIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPI
GLIMAPTRELVQQIHSDIKKFSKVLGIRCVPVYGGSGVAQQISDLKRGTEIVVCTPGRMI
DILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQV
EILARKVLNKPVEIQVGGRSVVNKDITQLVEVRLENERFLRLLELLGEWYEKGKILIFVH
SQEKCDALFRDLIKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKE
LELVVNFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQAVPD
DLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDS
DDDDDSIRKAGGDISQHTALAQIIAAASKVSTASAPMPTPVSAVQLLPNGGLPVTLPTIG
LAIPGTTAAVSATGLPVVANDGAGAARAAAIAAALNLQKNLLKLQEVAMPEHYEAELEIN
DFPQNARWRVTHKETLGPISEWTGAAITTRGQYFPQGRIPGPGDRKLYLFIEGPTEQSVK
RAKSELKRVLEDITNQGSQPNSAAQPGRYQVL
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggggaagcataaatctaggagggaggattcggagaggagtgaggtggaggat
ttgaaggagtcgaagcggagccaccgtgatcgcgatagagaaagagataaggagagaaat
ggggagagacacagggacagggaccgagatagggtgaagaaagaccgtgatagccggcgt
tcagagagagagaagagtagcgaatctgatgacaaggagagaaatggggagagacatagg
gagcgggatagggagaagaaggaccgcgatagccggcgttctgagaaagagaagagtatc
gaatctgatgagaaggagagaaatggggagaggcatagggaccaggagagggagaagaag
gaccgagatagtcggcgttctgagagagagaagagtagtgattctgatgacaagcatgat
agaattagggagaagcatagagacagggacaaggataaggataggacacgaagtcgggat
gacgacagagaaagagagagagccagagaaaagaagagggaaagagacagggaagagagg
gagagagagagggagagggaaagggagaaagagaagagggagagggcaagagagaaagaa
agagagagggaaagagaaagggagaagagggaacgtgagagagaagagcgagagagggag
agagagagggagaggagggagcgtgaaagagagagagagaaggagagagaaagagagagg
aggatacgggacagggagaagcatcgagaagctgatagtgatgacggtgatgataatcat
agggagcatgacaggaagcgacgcaggagagacgatgatggttacaaggatagagatcgt
gaacggagcaatagcaggccgcgcaagcacagggctgatagtgaagagagccctagaaaa
aggagtactgaggatgattctgataaggagaataaactgacccgtgaagaggagttgaag
gatgagcagcggagattggaggaggaaatggaaaagcggaggaggagagtgcaggagtgg
caggagacgaagagaaaaaatgaagaagctgagagagaaaagcgtggggaagcgaatgct
gaggaacccatgtctgggaagacctggacccttgaaggagaatctgatgatgaagaagta
cctcctatggggaaaccagagacggatatggacatggatgaaaatgtcaatcctactgac
aacgaagttggggattcaatgttggttgattctgagaatggaatagcttccacttcacag
aatggggctgatggtgatgctggggatgaggaaattgatccattggatgcctttatgaat
tctatggtattgcctgaagttgagaagctaaacaatacttcggctcctccgaattttgat
gatatggatgtggactcaaagaacaaacctaagaaggatgaattaagtaatggtgagcag
cctaggaagggttcaaataagtctatggggagaataatgcagggtgaagattcagagtca
gattatagtgaccttgagaatgatgaggatcctgtacaagaagaagatgatgatgagttc
atgaaaagggtgaagaagacaaaagctgagaagctttctgtagttgaccactctaagatt
gattatgaaccgttccggaaaaacttctatattgaagtgaaagagatcggtaagatgact
tctgaagaggttgttgcttaccgaaaagaattggaattgaagttacatggtaaagatgta
ccaaagccaattaaaacctggcaccaaacgggactcacgagtaaaatcttggagacaata
aagaagctggaatatgaaagtccaatgccaattcaagctcaggctctgcctataattatg
agtggtcgagactgcataggcgttgccaaaactggctcaggcaaaacccttgcatttgtg
ctgccaatgttgaggcatatcaaggaccagccacctgtggtagctggagatggacctatt
gggcttataatggcacctacaagggagcttgtacagcagatccacagtgatataaagaag
ttttccaaggtacttggtatcaggtgtgtgcctgtgtatggaggttctggtgttgctcaa
caaattagtgacttgaagcgtggtacagagattgttgtctgtactccaggtaggatgatt
gacatactttgcacaagtggggggaaaattacaaatctgcgtagagttacatatttggtt
atggatgaagctgatcggatgtttgacatgggttttgagcctcaaattactcgaattgtt
caaaatattcggccagatcgtcaaacggtactcttttctgcaactttccctcgtcaggta
gaaattttggcgcgtaaagtgttaaacaaacctgtggagatacaggttggtgggagaagt
gttgtgaacaaggatataacacagttggttgaggtgaggctggaaaatgaaaggttctta
agattgctggaactacttggggaatggtatgagaaagggaaaattttaatatttgtccac
tcgcaggagaaatgtgatgctttgttcagggatctcatcaagcatggttatccttgcctc
tcgcttcatggggctaaggaccagactgaccgtgaatcaaccatttctgattttaagagc
aatgtctgcaatttgctgattgctacaagtattgctgctaggggtttagatgtgaaggag
cttgaattggtggtaaactttgacgttccaaaccactatgaagattatgtccatcgtgtt
ggtcgtacaggtcgagctggcaggaaaggttgtgctatcacatttatttctgaggaagat
gcaagatatgcacctgatcttgtaaaagcattggaactttctgagcaagctgttcccgat
gacctgaaagctcttgctgatggttttatggcaaaagtgaatcagggacttgagcaagcc
catggtactggttatggtggaagtggttttaaatttaatgaagaggaagatgaggtgagg
agagctgcaaagaaagcacaggccaaagaatatggttttgaagaggacaagtcagattcg
gatgatgatgatgacagtatacggaaggcaggtggtgacatatcccagcatactgcctta
gctcagataattgctgctgcctccaaagtcagtacagcgagtgcacctatgccgacccct
gtctctgctgtacaactgcttcccaacggtggactacctgttacactgccaacaattggt
ctagcaatacctggaacaacggcagcggtgtctgcgaccggcctgcctgttgttgccaat
gatggagcaggggcagctcgggcagcagcaattgcagcggctctcaacttacagaaaaat
ttgttgaagcttcaagaagttgctatgccagaacattacgaagcggagttggagattaat
gattttccccagaatgctcgatggagggttacccacaaggaaactttgggcccaatttcg
gagtggactggagctgctattactacgagggggcagtattttccacaaggtcggatccca
ggacctggagaccgcaagctctacttgttcattgagggccctactgaacagtctgtcaag
agagctaaatcagaattaaaacgagttttggaagacatcacaaaccagggatcacaacca
aacagtgcagcccaacctggcagataccaagttttataa
DBGET
integrated database retrieval system
