Quercus lobata (valley oak): 115974719
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Entry
115974719 CDS
T07350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115974719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115974719
03012 Translation factors [BR:
qlo03012
]
115974719
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115974719
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115974719
Translation factors [BR:
qlo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
115974719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
NACHT
nSTAND3
Dicer_dimer
AAA_19
ATPase
T2SSE
NPHP3_N
Myosin_head
Motif
Other DBs
NCBI-GeneID:
115974719
NCBI-ProteinID:
XP_030951071
LinkDB
All DBs
Position
1:complement(3095622..3113596)
Genome browser
AA seq
1214 aa
AA seq
DB search
MLTSSPSLSHLLLFLHLHNSLPLQNPKTLTMKDRPRSSYGAVYVPPHHRLRSVITTPNYT
SSAAAATAGTGAGAGAADIVDSKLREPPQTAVISPRQTHSPYSQQEQLHNRISHFNSPRH
PPPFDDSVSEEGSDRELDSFPLPGASPFDNIDEWTRKFTMLLRDKEKQEFVSREKKDRRD
FEQISDLASRMGLYSHLYAKVVVFSKVPLPNYRFDLDDKRPQREVALPLGLLRRVDSYFG
EYLSQKSKTRESYPDISFSRSNSSCSIATDEGLFEQPEPLGASKSVMEKIHQRRSLQLRD
QQRAWQESPEGRKMLEFRGSLPAYKEKNTLLTAVSRNQVIIVSGETGCGKTTQIPQFILE
SEIESVHGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTHLLF
CTTGILLRRLLIDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATL
DAEHFSSYFGGAQIIHIPGFTYPVRTHFLEDILEMTGYKLTPYNQIDDYGQEKMWKMSKQ
APRKRKSQIASVVEDALGAADFKEYRPQTRESLSCWNPECIGFNLIEYLLCYICENEKPG
AVLVFMTGWDDISSLKDKLQGHPLLGDPSQVLLLACHGSMASSEQRLIFDEPEDGVRKIV
LATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQP
GECYHLYPRCVYNAFAEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQ
NAIDYLKIIGALDENEGLTVLGRYLTMLPVEPKLGKMLILGAIFNCLDPVLTIVSGLSVR
DPFLTPFDKKDLAEAAKYQFSRDYSDHLALVRAYEGWIDAERDLAGYEYCWRNFLSVQSI
KAIDSLRKEFFSLLKDTGLVDGNTTSYNAWSHDEHLVRAVICYGLYPGICSVVHNEKSFS
LKSMEDGQVFLYSNSVNARESKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGTIS
RGETDGHLKMLGGFLEFFMNPTLADMYQNLRRELDELIQKKLLYPRMDMHTHHELLSAVR
LLVSEDRCDGRFVFGRQVLKPSKPSVLETKTTLISRIESGPGGDNSKSQLQTLLTRAGYA
APTYKTKQLKNNQFRATVEFNGMQIMGQPCNNKKSAEKDAAAEALQWLMGGNQAGHEHLN
HMSMLLKKSKKDHN
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgctcacttcctctccttctctctctcatcttcttctatttcttcacctccacaattct
cttccacttcaaaaccctaaaaccctcacaatgaaggatcgacctcgctcttcctacggc
gccgtttacgttcctccgcaccaccgcttacgctccgtcattactactcccaactacact
tcctccgccgccgccgcaaccgccggtaccggtgcgggagccggagctgcagatatcgtc
gactccaagctccgcgagcctccacaaaccgctgtgataagccctagacagactcatagt
ccttactcgcaacaagagcagctccacaacaggatttcgcacttcaattcgccgcggcat
ccgccgccctttgatgattccgtctccgaagaaggctccgatcgcgagctcgattccttt
cctctaccgggtgcttccccctttgataacattgatgagtggacacggaagtttacaatg
cttttacgtgacaaagagaagcaagaatttgtctcaagggagaaaaaggatagacgtgat
tttgagcaaatatcagatttggcaagcagaatggggctgtacagccatctgtatgcaaaa
gttgttgtctttagcaaggtcccactgcctaactacagattcgatctggatgacaaacgt
ccacagagggaggtggccttgcctcttgggttgctaagaagagttgattcctattttgga
gaatacctctctcaaaagtctaagactagggaaagctatccagatatatcattttcgaga
tcaaacagtagctgtagtattgccactgatgaagggctttttgaacagcctgagccgcta
ggagccagtaagtctgtaatggagaaaattcatcaacggcgaagtttgcaactccgtgat
cagcaacgagcttggcaggaatctcctgaaggtagaaaaatgctggagtttcgtgggagt
ctccctgcttataaagagaagaatacattactgacagccgtttcacgaaatcaggttatt
attgtctctggtgaaactggctgtggcaagaccacacaaattccccaattcattttggaa
tcagagatagaatctgttcatggagctgtttgtagcattatatgtacgcagccaagacga
atatctgctatgtctgtttctgaaagagttgcttcagagagaggggagaaattgggtgaa
tctgttggatataaagttcgtttggaaggtatgaaagggagggatacccaccttctcttt
tgcaccactggcatcttgttgagaagattgctaattgatagaaacttaaaaggtgtaact
catgttatcgtggatgagattcatgaacgtggaatgaatgaagattttctgcttattgtc
ctaaaagatctccttcctcgccggccagagcttaggctgattctgatgagtgcaaccctt
gatgcagagcatttctcgtcctactttggtggagctcagataattcacatcccaggcttt
acatacccggtccggactcatttcctagaggatattttggaaatgactggttacaaattg
acaccatacaaccaaatcgatgattatggtcaagaaaagatgtggaagatgagcaaacaa
gcaccaagaaagaggaaaagccaaattgcttctgttgttgaggatgcactcggagcagct
gattttaaggagtatagaccccagactcgggagtctttgtcatgttggaatcctgaatgt
attggttttaatctcatagagtatcttttatgctatatatgtgaaaatgagaagcctggt
gcggtcctagtttttatgactggctgggatgacataagttctctgaaagataagctgcaa
ggtcatcctctattaggcgatccaagccaagttttgttgctagcatgtcatgggtctatg
gccagttcagagcagaggttaatatttgatgagcctgaagatggagtgaggaaaattgtt
cttgctactaatattgctgaaacaagtatcaccattaatgatgttgtatttgttcttgac
tgtggaaaggctaaagagacttcttatgatgcattgaataacactccttgtttgctccct
tcctggatttcgaaggtttctgctcaacaaagaagaggaagagctggccgtgttcaacct
ggagagtgttaccatctctatcctagatgtgtatacaatgcttttgcagagtatcaattg
ccagaaattttaaggacacctttgcaatctctttgtctgcaaataaaaagtttgaaactt
gggagtatttctgagttcctttctagggctttgcagtcaccagaattacttgcggttcaa
aatgctattgattatctaaaaatcattggtgccctggatgagaacgaaggtttgacagtc
ttgggacgctatttgactatgcttccagtggagccaaaacttggaaagatgctcatctta
ggggccatcttcaattgcctggatccagtattgactattgtttctggccttagtgtcaga
gatcctttcttaacaccatttgacaagaaggatcttgcagaggctgcaaaatatcagttt
tcccgagattacagtgatcaccttgcacttgtcagggcctatgagggctggatagatgcc
gaaagagatcttgctggttatgaatactgctggagaaattttctttctgtgcaatccata
aaagctattgattctctaaggaaagagtttttctctttgctcaaggatactggcttggtt
gatggcaacacaacctcttacaatgcatggagtcatgatgagcatctcgtccgagcagtt
atttgctatggactatatcctgggatttgctctgttgtgcacaatgaaaagtcattttca
ctgaaatctatggaggatggccaggtgtttctgtactcgaactcagtcaatgctcgggaa
tctaaaattccgtacccatggctggttttcaatgagaagataaaagtgaattctgttttc
ctccgggactcaactgctgtttctgattcagtactactactatttggtggaacgatctca
agaggggaaactgatgggcacttgaaaatgctgggaggatttcttgaattcttcatgaat
cctacattagcagacatgtatcaaaatttgaggagagaacttgatgagctaattcagaaa
aaactactgtatcccaggatggacatgcacacccatcatgagctcctatcagctgtgcgg
ttgttggtttcagaggaccgatgtgatggcagatttgtatttggccgccaggtccttaag
ccctcgaagccgtctgttttggaaacaaagacgaccttgatttcaagaattgaaagtgga
cctgggggtgataattctaagagtcagctccaaacattgctcaccagggccggatatgcc
gcacctacttacaagactaagcaactgaagaacaaccagttccgggccactgtggagttt
aatgggatgcaaattatgggtcagccttgtaacaacaagaagagtgcagaaaaggatgct
gcagctgaggctcttcagtggcttatgggtggtaaccaagcaggccacgagcatttaaat
catatgtcaatgttactaaagaaaagcaagaaggatcataactaa
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integrated database retrieval system
