Quercus lobata (valley oak): 115974963
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Entry
115974963 CDS
T07350
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03013
Nucleocytoplasmic transport
qlo03015
mRNA surveillance pathway
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115974963
09122 Translation
03013 Nucleocytoplasmic transport
115974963
03015 mRNA surveillance pathway
115974963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115974963
03041 Spliceosome [BR:
qlo03041
]
115974963
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115974963
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115974963
Spliceosome [BR:
qlo03041
]
Complex C
Other components
EJC/TREX
115974963
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115974963
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
115974963
NCBI-ProteinID:
XP_030951421
UniProt:
A0A7N2KUG3
LinkDB
All DBs
Position
2:21912174..21918891
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AA seq
428 aa
AA seq
DB search
MGETRENDGYEEELVDYDDEEANAPASVAAKVNGETVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVSAIV
LCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILA
LAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKRFMQEPMEIYVDDEAKLTLHGLVQHYIKLSESEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLKECNFPSICIHSGMSQEERLTRYKGFKEGQSRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNNVQMRFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagagaccagggagaacgatggttacgaagaagagcttgttgattacgatgatgaa
gaagccaatgccccggcctccgtcgcagccaaagtcaacggcgaaacagtcaagaagggc
tatgttggaattcacagttcaggattcagagactttcttttgaagccagagcttcttcga
gctattgtggactcgggatttgagcatccttctgaagtgcaacatgaatgtatccctcaa
gctattctgggtatggatgtcatttgtcaagctaagtctggaatgggaaaaactgctgtt
tttgttctttcaacattgcagcagattgaacctgttgccggccaagtttctgcaattgtt
ctgtgtcatacaagggagttagcataccagatttgtcatgagtttgagagattcagcaca
tacttgcctgatctaaaggttgctgtcttctacggtggtgtcaacatcaaagttcacaag
gatttgctgaaaaacgaatgccctcatattgttgttggaacgcctggaagaatattggca
ctggcaagagagaaggacctttctttgaagaatgtgaggcattttattctggatgaatgt
gacaagatgcttgaatcacttgacatgaggagagatgtgcaggagatcttcaagatgact
cctcatgataaacaagtaatgatgttttctgcaacactcagcaaagaaatccgcccagtt
tgcaagagatttatgcaagaaccaatggaaatttatgttgacgacgaggccaagttgacc
ctgcatggtcttgttcagcactacatcaaattgagcgagtcagagaaaaaccgcaagttg
aatgacctcctcgatgcactggacttcaatcaagttgttatctttgtcaaaagtgttaat
agagcagctgaactgaacaagctactgaaggagtgcaattttccctccatatgcatccat
tctgggatgtcccaggaggaaaggttgacgcgctacaaaggttttaaggaagggcagtca
aggattcttgtagccaccgatttggttggtagggggatagacattgaacgcgttaacatt
gtcatcaattatgacatgccagattcggcagacacttatctgcacagggttggtagagct
ggtaggttcggcaccaaagggcttgcaattacgtttgtttcatctgcttctgattcggag
gttctcaataatgttcagatgaggtttgaggtggatataaaagaacttcctgaacagatt
gatacctctacatacatgccatcatag
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