Quercus lobata (valley oak): 115975083
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Entry
115975083 CDS
T07350
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
115975083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115975083
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115975083
Transcription machinery [BR:
qlo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
115975083
RNA polymerase I system
115975083
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
115975083
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW6_SPT51-2
KOW2_Spt5
Spt5-NGN
KOW4_SPT5
KOW
KOW7_SPT5
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
DUF4438
Motif
Other DBs
NCBI-GeneID:
115975083
NCBI-ProteinID:
XP_030951588
LinkDB
All DBs
Position
2:complement(25483462..25494907)
Genome browser
AA seq
1053 aa
AA seq
DB search
MPRRGGDEDDDDLEPEEEGYFEEDEPGQLYDEDEEEEEEEEDRRGSSRKRQRSAYIDDVA
EEDDEEYEDSDEDYGGGGGGGGGGRDKRKKTKKSGQEFFDLEAQVDSDDEEEEEEGEDDF
IDNGGADLPDDDDGRRIHRRPLLPREDEQEDVEALERRIQARYARSSHAEYDEETTDVDQ
QALLPSVRDPKLWMVKCAIGREREAVVCLMQKSIDKGSELQIRSAVALDHLKNYIYIEAD
KEAHVKEACKGLRNIFSQKVMLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAK
VVDVDNVRQRVTVKLIPRIDLQALASKLEGREVVKKKAFVPPPRFMNIDEARELHIRVER
RRDPMTGDYFENIGGMMFKDGFLYKTVSMKSISSQNIKPTFDELEKFRKPGENGENDMAS
LSTLFANRKKGHFVKGDAVIVIKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNEKE
LCKYFEPGNHVKVVSGTQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTSG
VTRIGDYELHDLVLLDNMSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLDKKNS
VQDRYKNTVAAKDVVRIIEGPCKGKQGPVEHIHRGILFIYDRHHLEHAGFICAKAHCCVI
VGGSRGNGDRNGDSYSRFANLRTPPRIPQSPKRFSRGGHPMDSGGRHSHRGGRGGHDGLV
GTTVKVRQGPFKGYRGRVVEVKGSLVRVELESQMKVVTVDRNFISDNVVVSTPYRDAPRY
GSGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGN
PGSWGTSPQYQPGSPPSRTYEAPTPGSGWASTPGGNYSEAGTPRDSSSAYANAPSPYLPS
TPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGGDNEGPYFMPDILVNVRRSGE
DSVVGIVREVLPDGSCRIVLGSSGNGETITVLPNEMDVVVPRKNDKIKIMAGVLRGATGK
LIGVDGSDGIVKVDDTLDVKILDLVLLAKLAQP
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgccccgtcgcggcggagacgaggacgacgatgacctggagcccgaggaggaagggtat
tttgaggaggatgagccggggcagctctacgatgaagatgaggaggaagaggaggaggag
gaagatagacgcggatcgagtaggaagcgccagagatcggcgtacatagacgatgtagct
gaggaggacgacgaggagtatgaagatagcgatgaggattatggtggcggcggcggcggg
ggcggtggtggcagggacaagaggaaaaagaccaagaagagtggccaggagttcttcgac
ctcgaggcgcaggtcgattccgatgatgaagaggaagaggaggaaggcgaggatgacttc
attgataatggtggtgcggatctgcctgatgatgatgatggtagaagaattcatcggcgc
ccattgctgccgcgggaagatgagcaagaagatgttgaagctcttgagaggaggatccag
gctagatatgcaaggtctagccacgcagagtatgatgaggagaccacagatgtagatcaa
caagctcttttgccatctgttagggatccaaagctgtggatggtgaaatgtgcgattggt
cgtgaacgagaagcagttgtttgcctgatgcaaaagtccattgataaaggatctgaattg
caaatcaggtctgctgttgcccttgaccatctcaaaaactatatatatattgaagcagac
aaagaagcccatgttaaggaggcttgcaaaggtttgcgcaatatattttctcagaaagta
atgctggtacctattagagaaatgactgatgttctttcagttgaaagcaaagcaattgat
ctctctagggatacttgggtcagaatgaagattgggacatataaaggggatcttgcaaag
gtggtggatgtagataatgtgaggcaaagagttacagtaaaattaattccaaggatagac
ttacaggctcttgcaagcaaattggagggcagagaagttgtgaagaagaaggcatttgtt
cctcctccacgttttatgaacattgatgaggctagagaactccatattcgtgtagagcgc
agacgagatccaatgaccggagattattttgagaacattggtggcatgatgtttaaagat
ggttttttgtataaaacggtatccatgaaatcaattagctctcaaaatataaaacctact
tttgatgaacttgaaaaatttcggaaacctggtgagaatggagagaacgatatggctagt
ttgtcaactttatttgcaaatagaaagaaagggcattttgtgaagggcgacgcagttatt
gttatcaagggagatctcaaaaacttgaagggatgggttgagaaagttgaggaagagaat
gttcacatcagaccagaaatgaagggccttccgaaaactcttgctgtaaatgaaaaagag
ctttgcaagtactttgaacctgggaatcatgtgaaggttgtctctggtacacaggaaggt
gcaactggtatggttgttaaggttgagcagcatgtcctcataatattatctgatacaaca
aaggaacacatacgtgtgtttgctgatgatgttgtagaaagctctgaggtaacttctggt
gtcacaagaattggggactacgagcttcatgatctagtgcttctggataatatgagtttt
ggtgtaattattcgtgtagaaagtgaagcatttcaggttctcaagggagttcctgacaga
cctgaggttgctcttgttaagttaagagagattaaatgcaagcttgataagaaaaacagt
gtgcaagatcggtataagaatactgtagctgcaaaagacgttgtgaggattattgagggt
ccctgcaaagggaaacaaggccctgtggaacatatacaccgaggaatcttgttcatctat
gatcgccatcaccttgagcatgcaggctttatatgtgctaaagcccattgttgtgttatt
gtgggaggatcacgtggcaatggtgatagaaatggtgattcatactcaagatttgctaat
ctcagaactccacctcgtattcctcaatccccgaagagattttctcgaggaggtcatcca
atggactctgggggaaggcatagccatagaggtggaagaggagggcatgatggtttggtt
ggtacaacagtaaaagtccgccagggtcctttcaaaggctaccgtgggcgtgtagtagaa
gttaaaggctcattagttcgggttgaattggagtcacagatgaaggttgtcacagttgac
cgcaattttatttctgataatgtggttgtttctaccccatatcgtgatgctcctcgctat
ggcagtgggagtgagactcccatgcatccttctcgaactccgttacatccgtatatgact
cctatgagagatcctggagcaacacccattcatgatggcatgaggacacctatgcgtgat
cgagcatggaatccttatacgccaatgagtccgccaagggataattgggaagatggaaac
cctggctcttggggaaccagtccacaatatcagccaggaagtcctccttcacgtacatat
gaagcgccaactcctggttctggttgggccagtactcctggcggcaattatagtgaagct
ggaacaccaagggatagcagttctgcctatgccaatgctcctagcccttacttgccatca
actcctggtggacagccaatgacaccaaattcagcttcctatcttcctggcactcctgga
gggcagccaatgacaccgggaactggtggtctggatgccatgtctcctgtcataggcggg
gacaatgaagggccatatttcatgccagacatattggtaaatgtacgcaggtcgggagag
gattctgttgtaggaattgtccgggaggtgcttccggatggctcttgtaggattgttctt
gggtcaagtggcaatggtgaaaccataacagttcttcctaatgaaatggacgtggtagta
ccaaggaaaaatgacaagattaaaatcatggctggtgtgctacgtggtgccactggtaag
ttgattggtgtggatggcagtgatggaattgtaaaggtggacgacactcttgacgttaag
attttagacttggttcttttggcaaagctagcacagccatga
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