Quercus lobata (valley oak): 115976106
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Entry
115976106 CDS
T07350
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03082
ATP-dependent chromatin remodeling
qlo03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115976106
03083 Polycomb repressive complex
115976106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
qlo03036
]
115976106
Chromosome and associated proteins [BR:
qlo03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
115976106
Histone modification proteins
HAT complexes
HATB complex
115976106
HDAC complexes
Sin3A-HDAC complex
115976106
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
115976106
PRC2.2
115976106
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
115976106
Heterochromatin formation proteins
Other heterochromatin formation proteins
115976106
Chromatin remodeling factors
NuRD complex
115976106
NuRF complex
115976106
NuRF complex (fruit fly)
115976106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EML
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF12
WD40_MABP1-WDR62_2nd
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_SPT8
EIF3I
Beta-prop_WDR35_TULP_N
TFIIA
ANAPC4_WD40
Beta-prop_IP5PC_F
EPL1
Beta-prop_RIG_1st
OATP
Motif
Other DBs
NCBI-GeneID:
115976106
NCBI-ProteinID:
XP_030953070
UniProt:
A0A7N2KY35
LinkDB
All DBs
Position
2:complement(62501143..62511164)
Genome browser
AA seq
516 aa
AA seq
DB search
MESQQQGPVVKKKETRGRKPKPKEDKKDESAKPKEGKKAQQQHHHQQQQQQQQQQQQQQQ
QQQSAVDDKYTQWKTLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTD
GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSK
IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG
GKDKSVVLWSIQDHISTSAVSGGSITKQNSKPGEGNDKTADGPSVGPRGVYIGHEDTVED
VAFCPSSAQEFCSVGDDSCLILWDARVGSSPAVKVEKAHNADLHCVDWNPHDDNLILTGS
ADNSVRMFDRRNLTSNGVGSPIYKFEGHRAAVLCVQWSPDKSSVFGSSAEDGLLNIWDHE
KVSKKVERAARSPSSPPGLFFQHAGHRDKVVDFHWNAFDPWTIVSVSDDCDTTGGGGTLQ
IWRMSDLIYRPEEEVLAELEKFKSHVVSCASKARES
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgcagcagcaaggtccggtggtgaagaagaaggagactcggggccggaagccg
aaacccaaggaggacaagaaagacgaatctgcgaagcccaaggaaggcaagaaggcacag
caacagcaccaccaccaacaacaacaacaacaacaacaacaacagcagcagcagcaacaa
cagcaacaatccgctgtagacgacaagtacactcagtggaaaaccctcgtccctgttctc
tacgactggctcgccaaccacaacctcgtttggccttctctctcttgccggtggggccct
cagctggagcaagctacttacaagaatcgccagcgtctctatctctctgaacagactgat
ggtagtgttccaaatactctggtcattgcaaattgtgaagtggtcaaacctagggttgca
gccgcagagcacatatcccagttcaatgaagaagcacgttcaccatttgtaaagaagttc
aagaccatcattcatcctggagaggtgaacagaatcagggagctgccacagaactctaag
atagtggccactcatactgatagtcctgatgttctcatttgggatgttgaagctcaacca
aatcgtcatgctgtccttggagctacaaattctcgtccagatttgattttgactggacat
caagataatgcagaatttgctcttgcaatgtgcccaactgaaccctacgtgctatctgga
gggaaggacaagtccgtggttttgtggagtattcaggaccatatatcaacatctgcagtg
tctggtggctcaattactaagcaaaactctaaacctggggaaggaaatgataaaactgct
gatggcccttctgttggaccacggggtgtctacattgggcacgaggatacagttgaagat
gtggcattctgtccatcgagtgcacaggagttttgtagtgtaggtgatgattcttgcctc
atattatgggatgcacgagttggttctagcccagctgttaaggttgaaaaggcacataat
gctgatcttcactgtgttgattggaatccccatgatgataaccttattctaactgggtcg
gcagataactctgttcgtatgtttgatcgccgaaatctcacttcaaatggagttgggtca
cctatctataaatttgagggtcacagagctgctgttctctgtgttcagtggtctccagac
aagtcatctgtctttggaagttctgcagaggatggtctcttaaacatctgggatcatgag
aaggttagtaagaaggtagagcgagcagcaagaagtccaagttctccacctggcttgttt
ttccaacatgctgggcacagggacaaagttgttgacttccattggaatgcatttgatcca
tggacaattgtgagtgtgtctgatgattgtgataccactggtggaggagggacattgcag
atatggcggatgagtgatctgatctacaggcctgaagaggaggttctagcagagcttgag
aaattcaagtcgcatgtggtttcttgtgcttcaaaggctcgagagtcctga
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