Quercus lobata (valley oak): 115976407
Help
Entry
115976407 CDS
T07350
Name
(RefSeq) uncharacterized protein LOC115976407 isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115976407
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115976407
Surveillance factors
Other surveillance factors
115976407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
115976407
NCBI-ProteinID:
XP_030953525
LinkDB
All DBs
Position
2:70789621..70798556
Genome browser
AA seq
1635 aa
AA seq
DB search
MADDGKANLPNDLSSSKATDEAIGGNGEDKTLLGLLDESKDQVASESNIPLSPQWLYAKP
ADAKALTAGILGEVGAPGSLPHGNSIDPSPKDGWRLDGSQEKKDRRRAAPDVELNRRWRE
EERDTGILGRRDRRKEDRHADVISTSENRALSLTDRWQDSRSSGHESRRDSKWSSRWGPD
DKEKNSRTERRTDVEKEGNDTDKQSFVGSNRAASERDTDSRDKWRPRHRMEAHAGGLAAH
RTAPGFGLERGRVEGANVRFAQGRGRSNSASSTGSVLVNKNNSILGKSGPHEDIYIYPRG
KLLDIYRKKKTDPTFNATPDGMEHVSPITQVGSIEPLSFVAPDAEEEVVLGDIWKGKINS
SGVSRNSFRGKNGGSNDNITGGLRQSSTSNTEENVESFVVANLNDSCQFPVAVGLDTCGS
QFDRIEGLIMYCSVEHDSYKEDRYLPAAVGVVVTNGLMSTVSEGYDCRSVNEISDPSSTA
AELKSSENNQAEEVAILKHFKLKGIESATSFELGSQLPDDSSSLFDFLSLQKTSSSNQPP
LNNYEEGHPLGSDIPPEEWSLYYLDPQGETQGPFLGVDIIKWFEQGYYGPDLPVRLSDAP
DGSPFQELGSVMPHLRFRSGCASGDDLVTNLEPSDAVGGILEENMAASSSALDYKDCAVI
SSQKSAPSVHEATSGVSVQSRMLNQGYHSELQYRDDDSLQNFVRKDDEVIFPGRLGSSNG
NSLRRPSTDIHGSFSSSMRHPSLANEYSETAMRNHQDDNMHPFGLSLSELKDSCAQSSNM
SSSMGDQGHFVDPLVKRDATFVSQSSLGAMADQPFGETWTGDYRRNKHSNPNFHLGSLDI
PHISHMEQECSAFDMTEHLMPQKLQMEQLQQQNFLSHPFRHVIGLGVENSSGLVLSQSNN
PNSQQAVHHLEPDLEHLLALQRHELQQQHLLQQQQVHLHEMKLRQQQQQQSQIQQFLHHQ
ISQPGYGQSEIDPLRDNPFDQIQMRKHLLHELQLNSHSSRHLDPMIEQIIQAKVGQNAAQ
GRQADILDLMLQPKHGNTITLEQHLRLQQEQAQVQQLSMTLRQQLGLEGERHNGGRWSVD
EAGQFFINPTSHQQAVSARFNAPDFCLQQNRLSSHEEQLRNLSWNHALPEQIQQGVYDPS
SMSFGRSMPLPASAPGTNLDSVNTSSHGLDLQERRLYRQSDDQLGSFSSGFPSHPQKASD
EYYASHLDAIQSCSSGNNGRVENSWIEAQKKQLHLEALRQRMEAEVNVSSVDSNVWASAG
GEENSRRGLMDLHKKMVLQSAQSSEIDYQHSVLPSRSQETFLLNSESNYSNFPFNLPPDQ
QLFLNDSFSKRPQDSNSSAFLQDHFVGVAVNEQKFNNLGKSERSPFGSNSGDQSFLLGTK
DTSHVGYVNNSLIGKSATDKDLLELEGNMGKRHGSKGMISTSSSILEITENLSEKTETAL
GRELLFNAHSRHSSLSSAGGDGGGLFSYEMGLDKSLRGEDIGNDRLPSTLTKGFDSAFHT
SHDVLLEPASASLVKPKNAMGMEASDEFGPLSEGGCELVGDHQASRKKDVHFQRTSSSSD
ASVSETLFIDMLKKPALPETDVASGAPSESSDGGIQAGRSGKKKGKKGRQIDPALLGFKV
SSNRIMMGEIQRFED
NT seq
4908 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgacggcaaggccaatctgccaaacgatctctcctcctccaaagcgacagat
gaagccattggaggaaatggtgaggacaagacacttttggggttactcgatgagtcaaaa
gaccaagtagcatctgaaagcaatattcctctttcaccacagtggctctatgctaaacca
gctgatgctaaggcattaactgctggcattttgggggaagtgggtgcacctggttctttg
ccccatggaaactccatagatcccagcccaaaagacggttggcgtttagatgggtctcag
gaaaagaaagaccggagaagggctgctcctgatgttgaattgaatcgccgctggcgtgaa
gaggagagagacactggcatacttggtagaagagatcgcagaaaagaagatcgtcatgca
gatgtcatctcaacttctgagaatagagccttgtccttgactgatcgctggcaagatagc
cgtagttctgggcatgaatcccggagagacagcaaatggtcatcaaggtggggtcctgat
gacaaagaaaagaattctagaactgaaaggaggacagatgtagagaaagagggtaatgac
actgacaaacaatcttttgttggtagtaatcgtgcagcttctgaacgtgacactgattct
cgtgataaatggaggccacgccatcgtatggaagctcatgcaggtggcttggcagcacac
cgcactgcaccagggtttgggttggagagaggacgggtggagggtgcaaatgtgcgattt
gctcagggacgaggaaggtcaaactctgcatcttctactgggtctgttcttgttaataag
aataacagcatactaggaaaatctggcccccatgaagatatatatatctaccctagggga
aaacttctagatatttatcgtaagaaaaagactgatccaacattcaatgccacgcctgat
gggatggagcatgtatcaccaataacacaagtaggttctattgagccattgtcttttgtt
gcacctgatgcggaggaagaggttgtacttggagatatatggaagggaaaaatcaatagc
agtggagtgtcacgcaactcatttagaggcaagaatggaggatcaaatgataatatcact
ggtgggctgagacagagttccactagtaatactgaagaaaatgttgaatcttttgtagtg
gctaatttaaatgattcttgccaatttcctgttgccgtggggttggatacttgtggttca
cagtttgatagaattgaggggttaattatgtattgttctgtagaacatgattcttataaa
gaagatcggtatcttccagcagcagttggtgtggtagtaaccaatggcttgatgtcaaca
gtttcagagggctatgattgccgcagtgtcaatgagattagtgatcccagcagtactgct
gctgaactcaaatctagtgaaaataaccaggcagaagaagttgcaattttgaaacacttt
aagttgaaaggcattgagtcagctacttcctttgaacttggcagccagcttcctgacgat
tcaagttctctgtttgattttctgtctttacagaaaacttcaagcagtaatcagccacct
ttaaataactatgaggaggggcatccactgggaagtgatatcccacctgaggaatggagt
ttgtattatcttgatcctcaaggggaaactcagggaccttttctgggagttgatatcatt
aagtggtttgaacaaggctattatggacctgatttaccagttcgcttgtcagatgcccct
gacggatcaccttttcaagaacttggtagtgtcatgccacatcttagatttagatctggg
tgtgcctctggcgatgatctggttacaaatttagaaccatctgatgctgttggaggcatc
ttagaagagaatatggctgcttcttcttctgcacttgactataaagattgtgctgttata
agtagtcaaaagtctgctccatctgtacatgaggctacctctggtgttagtgttcagtca
agaatgcttaatcagggttatcattctgagctccagtatcgcgatgatgatagtctccaa
aactttgttagaaaagatgatgaagttatctttcctggaaggcttggaagtagcaatggt
aactctttgcggagaccttctactgacattcacggttcattttccagttctatgcgacat
ccttcccttgcaaatgaatattcagaaactgccatgcgtaatcatcaggatgataatatg
catccttttggcctctcattgtctgagctcaaagacagttgtgctcaatcatccaatatg
tcatcaagtatgggtgatcagggtcactttgttgatcctttggtcaagagagatgccact
tttgtgagtcagagctccttgggtgctatggctgaccaaccttttggtgagacatggact
ggtgattatagaagaaataaacattctaaccctaattttcatctgggttctctagatatt
cctcacatatctcacatggagcaagaatgcagtgcttttgacatgacagagcatctgatg
ccacaaaaactgcaaatggagcaacttcaacagcagaatttcctttctcatcccttcaga
catgttatagggttgggtgttgagaattcttctggtttagttttgtctcagagcaataac
cctaattcccagcaggcagtccatcatctggagccagatctggaacatcttttggcactt
caacggcatgagcttcaacaacagcatctgttgcagcaacagcaggttcatctccatgaa
atgaaactgcggcaacaacagcagcagcagtctcaaattcagcagtttctgcatcaccag
atatctcagcctggttatgggcagtcagagatagatcctctaagagacaacccttttgat
cagattcaaatgaggaagcaccttctgcatgagctgcagctgaattctcactcttcaagg
caccttgatccaatgattgagcagatcatccaagcaaaagttggccagaatgccgcccaa
ggcaggcaggctgatattttggaccttatgttgcagccaaagcatggaaatacaatcaca
ttagaacagcatcttcgtctacagcaagaacaggcgcaggtacagcaactatctatgaca
ttgaggcagcagttagggttggagggggaaaggcataatggtgggcgttggtcagttgat
gaagctggtcagtttttcataaatcctactagtcatcagcaggctgtgtcagctagattt
aacgcgccagatttttgcctgcaacagaataggctttcctcccatgaggagcaactgaga
aatctcagctggaatcatgctttaccggagcaaattcagcaaggtgtttatgatcctagc
tcaatgtccttcgggaggtcaatgcctcttcctgctagtgctcctgggacgaacttggac
agtgtaaacactagttctcatggtctagatctacaagagcgacgactctataggcaatct
gatgatcaacttggttctttttcttctggtttcccatctcatccccaaaaagcgtccgat
gagtattatgcttctcatctagatgcaattcagagctgctcctctgggaacaatggtcgg
gttgaaaatagctggattgaagcacaaaagaaacaattgcatcttgaagctttgcgacaa
agaatggaggcagaagttaatgtatcttctgtagattcaaatgtttgggcatctgcagga
ggtgaagagaactcaagacgaggtttgatggaccttcataaaaaaatggttcttcaatct
gcacagtcatctgaaattgattatcaacattctgtattaccttcccgaagtcaggaaaca
tttctgctgaattcagagtcaaattattcaaattttccttttaatcttcctccagatcaa
caattatttctgaacgactctttctcaaaaaggcctcaagactccaattcaagtgccttc
ttgcaggatcactttgttggtgtggctgtgaatgaacagaagttcaacaatttgggaaag
agtgaaaggtctccctttggatctaattctggagaccagtcgttcttattgggcactaaa
gatacttctcatgttggttatgtaaataatagcctaattggtaaatcagctacagataaa
gacttattagagttagaaggaaacatggggaagagacatggatcgaagggtatgatttca
acaagcagttcaattttggagatcacagaaaacttgtcagagaaaacagagacagcattg
ggcagggaactactttttaatgctcatagtaggcacagctcactgagtagtgctggtggt
gatggtggaggcttattcagttatgagatgggattagataaatcactccgaggagaggac
attggtaatgacaggctgccctctactttaactaaagggtttgacagcgcttttcataca
tcccatgatgttttgttggagccagcatcagcttctcttgtcaagccaaaaaatgcaatg
ggcatggaagcctctgatgaatttggcccactttcagaaggtgggtgtgagttagttggt
gaccatcaggcatctaggaagaaggatgtgcattttcagaggacctcgtcttccagtgat
gcttctgtttccgagacattattcatagacatgctcaaaaaaccagctctcccagagact
gatgtagctagtggggctccttcagagtcatctgacggtggcatacaagcagggcgaagt
ggcaaaaagaaagggaagaaaggaagacagattgatcctgccctccttggcttcaaagtc
tccagcaaccggataatgatgggtgagattcagcgctttgaagattga
DBGET
integrated database retrieval system
