Quercus lobata (valley oak): 115976450
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Entry
115976450 CDS
T07350
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115976450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115976450
03036 Chromosome and associated proteins [BR:
qlo03036
]
115976450
Transcription machinery [BR:
qlo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115976450
Chromosome and associated proteins [BR:
qlo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115976450
PBAF complex
115976450
GBAF(ncBAF) complex
115976450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
YEATS
Motif
Other DBs
NCBI-GeneID:
115976450
NCBI-ProteinID:
XP_030953595
LinkDB
All DBs
Position
2:complement(71574591..71577554)
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AA seq
540 aa
AA seq
DB search
MSANNNNPPKSLGASSSPFGNAGMPTNPSFTQSQAQAQIEAAFQNQYQLSQAHAIAQAQS
KALAHAQAQAQATHAQFQAHLQAQGLALSQNHSAGIGNLGGSSPSMSTPGNSSIKRMPQK
PPIRPLGVSPTHMVSPLRQMEQFSANRRKKQKLPEKQLQDKVAAILPESALYTQLLEFEA
RVDAALARKKVDIQEALKSPPCVQKTLRIYVFNTFTNQIRTIPKKPNAEAPTWTLKIVGR
ILEDGVDPDQPGVVQKSNPLYPKFSSFFKRVTISLDQRLYPDNHVIMWENARTPAPHEGF
EVKRKGDKEFNVNIRLEMNYVPEKFKLSPALMEVLGIEVDTRPRIIGAIWHYVKARKLQN
PNDPSFFNCDPPLQRVFGEERMKFTMVSQKISQHLFPPQPIHLEHKIKLSGNSPAGTACY
DVLVDVPFPIQRELSALLANAEKNKEIDTCDEAICSAIKKIHEHRRRRSFFLGFSQSPVE
FINALIESQSKDLKLVAGEASRSAEIERRSDFFNQPWVEDAVIRYLNRKPVAGSDAPGSM
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcaaacaataataacccgcctaagagccttggggcctcttcatcgccctttggc
aatgctggtatgcccacaaacccttcgtttacacaatcacaagctcaagcacaaattgag
gccgcctttcaaaatcagtatcagctgtcccaagcgcatgccattgcacaggcacagtca
aaagccttggctcatgctcaagctcaagcacaagcgacacatgcccaattccaagctcat
ttacaagctcaagggctggcactcagccagaaccattcagctggcattggtaatttgggt
ggatcttcgccttccatgtcaacgcccggtaattcaagtattaagcggatgccccaaaaa
cccccgatccgacctcttggtgtttcccctacacacatggtttcccccttgagacaaatg
gagcagttttctgccaatcggagaaagaagcagaagcttcccgagaaacagctacaagat
aaagtggcagcgattctacctgagtctgctctatatacccagcttcttgaatttgaggct
cgtgttgatgctgctctggcaagaaagaaagtagacatccaagaggcccttaaaagccca
ccctgcgtgcagaaaactcttcgaatttatgttttcaacacttttacaaaccagattcgc
accattccaaagaagccaaatgccgaggcccctacttggacacttaagatagttggtaga
atcttggaagatggggtagatcctgatcagcctggagtggtccaaaagtcaaaccctttg
taccctaaattctcatctttcttcaagagagtgaccatttccttggaccagagactatat
cctgacaaccatgtcattatgtgggagaatgctcgaacccctgctcctcatgagggcttt
gaggtgaagaggaaaggggataaagagtttaatgtgaacatacgcttggagatgaactat
gtgcctgagaagttcaagctttcaccagcattgatggaagttcttggtattgaggttgat
acccgcccgagaataattggtgcaatctggcattatgtaaaagctagaaaactgcagaac
ccgaatgacccctctttctttaattgtgatccacctcttcaaagagtttttggggaagaa
aggatgaaattcaccatggtttcacagaagatatcgcagcatttattcccacctcagcct
atacatttggagcataagatcaagctttcaggaaacagtcctgccggaactgcctgttat
gatgtgttggttgatgtgccttttccaattcagagggaattgtctgctttattggctaat
gcagagaagaacaaagaaattgatacctgtgatgaagcaatatgcagtgctataaaaaag
atccatgagcaccgccggaggcgatcattcttccttgggtttagtcaatcaccggtggaa
ttcatcaatgcattgatcgaatctcaaagcaaggacttgaagcttgtcgctggagaagca
agtcgtagtgctgaaatagagcgccggtcagatttcttcaaccaaccatgggttgaagat
gctgttatccgatatttgaatcgcaagccagttgcaggaagtgacgctcctggaagtatg
tga
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