KEGG   Quercus lobata (valley oak): 115976600
Entry
115976600         CDS       T07350                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    115976600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:qlo03019]
    115976600
   03036 Chromosome and associated proteins [BR:qlo03036]
    115976600
Messenger RNA biogenesis [BR:qlo03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     115976600
Chromosome and associated proteins [BR:qlo03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     115976600
    COMPASS/SET1 complex (yeast)
     115976600
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_WDR36-Utp21_2nd ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR3_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_Aladin WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_SPT8 Beta-prop_NUP159_NUP214 WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_NOL10_N WD40_RFWD3 NBCH_WD40 PAC11 Beta-prop_ACSF4 TRM82_WD WD_LRWD1 Beta-prop_VPS8 PD40 Beta-prop_SCAP DUF4221 Tricorn_2nd
Other DBs
NCBI-GeneID: 115976600
NCBI-ProteinID: XP_030953852
LinkDB
Position
2:complement(74869255..74875140)
AA seq 343 aa
MTSLTELDDDTVRTMSIGAVFSDFLGKINSIDFHRKEDLLVTASEDDSVRFYDIANAKLV
KTTYHKKHGADRICFTHHPNSVICSSRYNLETTGESLRYLSMYDNRCLRYFKGHKERVVS
LCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAYDQQGLVFAVAMEGGAIK
LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS
LEPSPTANIEATFTPDGQYVVSGSGDGTMHAWSINRRNEVASWNSHIGVASCLKWAPRRA
MFVAASTVLTFWIPDNSKLNADPASASISMDTEAPTQSELTSQ
NT seq 1032 nt   +upstreamnt  +downstreamnt
atgacttcgcttacggagctcgacgacgatacggtgcgcaccatgtccattggagctgta
ttttcagacttccttgggaagataaattcaattgattttcataggaaggaagatttactt
gttacggccagtgaggatgattctgtgcgattctatgacattgctaatgctaagttggtc
aagaccacgtatcataagaagcatggtgctgatcgtatatgctttacccaccaccctaac
tctgttatatgttcttcaagatacaatttggagaccactggagaatccttgcggtatcta
tcaatgtatgataatcggtgccttcgttacttcaaagggcataaagagagagtcgtttcc
ctctgcatgtctccaatcaatgatagcttcatgtccggttctcttgatcacagtgttaga
atatgggatcttcgtgtaaatgcttgccaggggattcttcgcttgcgtggtagacctaca
gttgcatatgaccaacaaggccttgtttttgctgtggcaatggaagggggtgctattaaa
ttgtttgattcacgttcctatgacaagggtccctttgacacctttttagttggtggagat
actgctgaggtttgcgatatcaaatttagcaacgatggaaaatcaatgctattgacaacg
actaataacaacatatatgttcttgatgcatacggaggagagaagcgttgtgggttcagt
ttggaaccatctccgacagcaaatatagaggcaacatttacaccagatggccagtacgtg
gtctcaggctcaggagatggaaccatgcatgcttggagcataaacaggcgaaatgaggtg
gcaagctggaacagccacattggtgtggcatcgtgcttaaagtgggctcctcgtagagcc
atgtttgttgctgcatcaactgttctcacgttttggatacccgacaattccaagttaaat
gctgaccctgcttctgcttctatttctatggacactgaagctccaacccaatccgaactt
acatctcaatga

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