Quercus lobata (valley oak): 115976618
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Entry
115976618 CDS
T07350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH17 isoform X1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
qlo03036
]
115976618
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
115976618
Chromosome and associated proteins [BR:
qlo03036
]
Eukaryotic type
Meiosis-specific proteins
Others
115976618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_C
ResIII
HHH_5
Cdd1
AAA_22
IMS_HHH_1
DNA_pol_lambd_f
HHH
Motif
Other DBs
NCBI-GeneID:
115976618
NCBI-ProteinID:
XP_030953890
LinkDB
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Position
2:75341565..75352304
Genome browser
AA seq
1262 aa
AA seq
DB search
MDSYTLKSVLDLPAHFRSAFKFRYFNSLQSECFPVCFHSDANMVISAPTGSGKTVLFELC
ILRLLSKFISEDGRFIHIKGTLKTIYIAPSKALVQEKLRDWKEKFGSWGINCLELTGDNE
FYNIKNIQDADIVLTTPEKFDAVTRYRIKDGGLSFFSDIALLLIDEVHLLNDPRGATLEA
IVSRIKMLSRNPELRSSPLAHVRYLAVSATIPNVEDLAEWLLVPVQGIKRFGEEMRPVKL
TTKVFGYTPAKNDFLFEKRLQNYIFDVLMQFSRGKSALVFCSTRKGAQEAAQCLSQIAMT
FGYSNPFIKSNEQKERLREASLSCSDKQMQSYIIFGVGYHNGGLCLKDRNLIEGLFLKGD
IQILCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQMCGRAGRPPFDDTG
MVIIMTRKETVHLYENLLNGCEVVESQLLPCVTEHLTAEIVQLTVSDITKAIEWMKCSYL
YVRMKKNPENYAVKKGTSIDRIERHMQEICVQKVNELSQHQMIWTDEDGFLLKSLDPGKL
MTKYYLKFDTMKHIMQTPVNCTIEDALHIICRAEEIAWIQLRRNEKKLLNDINIDKDGRL
RFHLLDDKGKRKKRIQTREEKIFILANDCLTGDPSVHDLSLSQDMNSICSNGSRIVKCMK
EYFIYKKNYKGALNSTLLAKSLYQKLWDDSPYLLKQLPGIGMVTAKALHSMGINSFETLA
EADPRRIEIVTGRKYPFGNHIKDSLHSLPPKVDMKVEEIECQRQGKSKLVLTLTRLTQSV
QPTKRHYADMIVGSEEENLIIFHEKISRLEEFSSPYSAAILLSNPHQGKLTIKADLIFEE
YSMASAIICLTYFAFVYTGIGFQTKSSFCIIIHVVGIDLRQKLLLMKENNLSMNYKKRNK
QPSFFPLPEEVYIIDDDEPTSRAPAKEHNRSVNSERKNDSLPTFNLLDEEMGEGEPDVED
KEDDCKIITEKTVFDHIREKSKNFPIFAASSSACSPLSETLIFTRKQTREKQLELQSEVE
VLEETDRNKIPRQSVVNPSSETIEAEDYGLGTYKCMTPNHHITARSLDTMIEGGPPPESA
ESTLKTSIEESIFDHIRRKSKNFPVINKSKTKDFESLLWTKEHFSDSQADSSSASSEILK
EMNPDKVLRTSDSESTEVKHNIYFGSSYGLLNLPPRVSSTNADSSSTKMLSFDISMLKNR
EQLAEPVSSMKSSSKQQCSPRESKRQQCSPNEFKRQCCSMETTSETKEADSFLGFKSVFS
FL
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggattcatacacactgaagtccgttttagatttgcctgcacattttcgttcagctttt
aaattcaggtacttcaattcgctgcaaagtgaatgctttcctgtttgcttccattccgat
gcaaacatggttatttcagcaccaacaggaagtggtaaaacggtgctctttgagctttgc
attttgaggcttctctcaaagttcatctctgaagatgggaggttcatccatataaaggga
accctcaaaacaatctatatagccccatctaaggccttagtacaagagaagctccgtgat
tggaaggagaagtttggatcatgggggataaattgcctggagttgactggtgataatgaa
ttttacaacataaagaatattcaagatgctgatatcgttctaactactcctgagaaattt
gatgctgtgactcgttatcgcataaaagacggtggcttgagctttttcagtgatatagca
cttctacttattgatgaagttcacctattaaacgatccacgtggagccactttggaggca
atagttagcagaataaaaatgctttctcgcaacccagagctgagatcaagtcctcttgct
catgtccgctaccttgctgtgtctgccacgattccaaatgttgaggaccttgctgaatgg
cttttggttcctgtccaaggaattaaaaggtttggggaagaaatgaggcctgtcaagttg
actactaaagtttttggctacaccccagccaaaaatgactttctatttgagaagcgcctt
caaaactatatttttgatgttcttatgcaattttcaaggggaaaatctgctctggttttt
tgttcaactagaaagggagcacaagaagcagcacaatgcctctctcagatagcaatgacc
tttggatattcaaatccattcattaaaagcaatgaacagaaggaaaggctaagggaagca
tcactatcatgcagtgataaacaaatgcaatcttatatcatttttggtgttggttatcac
aatggtgggctttgcttgaaggatcgcaatctcattgaaggtctttttcttaagggcgat
attcaaattctgtgcactacaaatactcttgcccatgggatcaacctaccagcacacaca
gtagtgataaaatcaacgcagcacttcaacaaggaaaaaggtctctacatggaatatgac
cgatccacaatattacagatgtgcgggagggcaggccggccaccatttgatgatacagga
atggttataatcatgacaagaaaagaaacagtacatttgtatgagaatctattgaatgga
tgtgaagtggtggaatcgcaattgcttccatgtgtgacagagcacttaactgcagagata
gttcaactgaccgtctctgatattacaaaagcaattgaatggatgaagtgctcatatttg
tatgtcagaatgaaaaagaaccctgagaattatgcagttaaaaaagggacttcaattgac
cgtatagagaggcatatgcaagagatttgtgtccagaaagttaatgagttatcccaacat
caaatgatctggactgatgaagatggtttcctcttgaagtcactagatcctggaaagttg
atgacaaagtactatttgaaatttgacacaatgaaacacattatgcagacccctgtaaac
tgcactatagaagatgcacttcatatcatatgccgtgctgaggaaattgcttggatacag
ctcagacgcaatgagaagaaacttctaaatgacataaacattgacaaagatggccgactt
cgctttcacctccttgatgataaggggaaacggaaaaagcgtatccaaactagagaagaa
aaaatatttattttggcaaatgattgcttgactggtgatccttcagttcatgatttatcc
ctgagccaggacatgaattctatatgctcaaatgggagtagaattgtgaagtgcatgaaa
gagtatttcatttacaagaagaattataaaggagccttgaattcaacactcttagcgaaa
tccttgtatcaaaaactctgggatgatagtccatacttgctgaaacaattacctggcatt
ggaatggtgaccgccaaggcactgcattcaatgggaattaactcatttgagactttagct
gaagctgatccaaggaggatagagatagtcactggtcgaaaatatccattcggaaaccat
attaaggattccttacattcactacctccaaaagtcgacatgaaggttgaggaaattgag
tgccagaggcagggaaagtccaagctggtattaacattgactaggctaacacaatcagtg
caaccaacaaaaagacattatgctgatatgattgttggttcagaagaggagaacttgatt
atcttccatgagaaaataagcagactggaagagttctccagcccctatagtgcagcaatt
ctcctgtcaaatcctcatcaaggaaagctgactattaaggctgatcttatttttgaagag
tacagtatggcctcagccattatatgtctaacttattttgcgtttgtttatactggcatt
ggattccagactaagagttcattttgtatcatcattcatgtagttggtattgatctccgc
caaaaacttttattgatgaaagagaacaatttaagcatgaattataaaaagagaaataag
cagccttccttttttcctctgcctgaggaagtatacatcatagatgatgatgaacctaca
tctcgagctccagccaaagagcataacagatcagtcaactctgaaaggaaaaatgattcc
ttgcccactttcaacctcctagatgaagagatgggggaaggtgagcctgatgttgaagat
aaagaagatgattgcaaaatcatcactgaaaaaacagtgtttgatcacatacgtgaaaaa
tccaaaaactttcctatcttcgctgcatcaagtagtgcctgttctccattatcagagacc
ttgattttcacaagaaagcaaactcgtgagaagcagcttgaactccaaagtgaagtagaa
gttctggaagagacagacagaaacaagattccacgacagagtgtggtcaatccttcttca
gaaaccatagaggcagaagactatggacttggtacttacaaatgtatgactccaaatcac
cacattactgccagaagcttagataccatgatcgaaggcgggcctcctccagaatctgcg
gaaagcacattgaaaacttcaattgaggaatcaatatttgatcatatacggagaaaatct
aagaatttccctgttatcaataaatcaaagaccaaggattttgagtctttactctggaca
aaggaacatttctctgacagtcaggccgactctagtagtgcttcctctgaaatattgaaa
gagatgaatccagataaagtcctaagaacttcagattcggaaagcacagaggtcaaacac
aacatatattttggaagctcctatgggttgctgaatcttcctccaagagtttcaagcacc
aatgctgattcatcatctactaagatgctgtcatttgatatttccatgttaaagaataga
gagcagttagcagaaccagtgagctccatgaaaagtagcagcaaacagcaatgctctcca
agagaatctaaaaggcagcagtgttctccaaatgaattcaaaagacagtgctgctcaatg
gaaacaactagcgaaaccaaggaagcagattcatttcttgggtttaagagtgtcttttca
tttctctga
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