KEGG   Quercus lobata (valley oak): 115977947
Entry
115977947         CDS       T07350                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03018  RNA degradation
qlo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115977947
  09123 Folding, sorting and degradation
   03018 RNA degradation
    115977947
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:qlo03019]
    115977947
   03041 Spliceosome [BR:qlo03041]
    115977947
Messenger RNA biogenesis [BR:qlo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     115977947
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     115977947
Spliceosome [BR:qlo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    115977947
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 115977947
NCBI-ProteinID: XP_030955841
UniProt: A0A7N2KU02
LinkDB
Position
2:complement(17784189..17792455)
AA seq 100 aa
MSGSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLK
TTDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA
NT seq 303 nt   +upstreamnt  +downstreamnt
atgtctggaagcaggaaagaaaccgttttggacctggcaaagtttgtggacaaaggtgtc
caagtcaagctcactggtggtagacaagtgacggggactctaaaaggatatgatcagttg
ctaaaccttgttttggatgaagcggtagagtttttgagagatcctgatgatccactgaag
actacggatcagaccaggcgcctgggcctaatagtttgcaggggaaccgctgtaatgctt
gtgtccccaacagacggcacagatgagattgccaacccttttatccagccagatggggcc
taa

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