Quercus lobata (valley oak): 115977947
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Entry
115977947 CDS
T07350
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115977947
09123 Folding, sorting and degradation
03018 RNA degradation
115977947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115977947
03041 Spliceosome [BR:
qlo03041
]
115977947
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115977947
mRNA degradation factors
5'-3' decay
Lsm complex
115977947
Spliceosome [BR:
qlo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
115977947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
115977947
NCBI-ProteinID:
XP_030955841
UniProt:
A0A7N2KU02
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Position
2:complement(17784189..17792455)
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AA seq
100 aa
AA seq
DB search
MSGSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLK
TTDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA
NT seq
303 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaagcaggaaagaaaccgttttggacctggcaaagtttgtggacaaaggtgtc
caagtcaagctcactggtggtagacaagtgacggggactctaaaaggatatgatcagttg
ctaaaccttgttttggatgaagcggtagagtttttgagagatcctgatgatccactgaag
actacggatcagaccaggcgcctgggcctaatagtttgcaggggaaccgctgtaatgctt
gtgtccccaacagacggcacagatgagattgccaacccttttatccagccagatggggcc
taa
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