KEGG   Quercus lobata (valley oak): 115979220
Entry
115979220         CDS       T07350                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4-like isoform X1
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03020  RNA polymerase
qlo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    115979220
  09124 Replication and repair
   03420 Nucleotide excision repair
    115979220
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:qlo03021]
    115979220
   03400 DNA repair and recombination proteins [BR:qlo03400]
    115979220
Transcription machinery [BR:qlo03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     115979220
DNA repair and recombination proteins [BR:qlo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      115979220
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 115979220
NCBI-ProteinID: XP_030957061
LinkDB
Position
3:complement(35755188..35759012)
AA seq 234 aa
MCNSTSTLKSKGKEGSFKGKDDSSMKSKYGRKVHINFEGFPEPKTLSSPKYVGKDDTPFP
KGYSSKGGKGDKIANGGKTPAKEPQPLELNIELELPENVKCMSMMDCEAASILQGIQDQM
VTLSKDPELKLPVPFDKGLQYAKRGVHYTNPQSVRKVLETLTKHGVSNSELCEIANVGPE
SVDEVFSLVPSLKAKRSKLSEPLKGVLSELAKLKESASLASQLEEESQHGGKFT
NT seq 705 nt   +upstreamnt  +downstreamnt
atgtgcaatagtacttcaaccttgaaatcaaagggaaaggaaggtagttttaaagggaag
gatgacagctcaatgaagtccaagtatggaaggaaagttcatatcaattttgaaggtttc
cctgaacctaaaactctttcttcaccaaaatatgtagggaaggatgacactccatttcca
aaaggctattcaagcaaagggggaaaaggagacaaaattgctaatggtggaaagacccca
gctaaagaaccacaaccactggagcttaacattgagctagagctaccagaaaatgtcaaa
tgcatgagcatgatggattgtgaggctgcaagtattttacaaggaatccaggatcagatg
gtcacattatcaaaagatccagaattgaaactccctgtaccatttgacaagggactgcag
tatgccaaaaggggtgtccattatacaaatccccagtctgttagaaaagttcttgagact
ctcacaaaacatggcgtttccaatagcgagttatgtgagattgccaatgttggtccagag
tctgttgatgaagttttttctctggttccatccttgaaggctaagagaagcaagcttagt
gaacccctcaaaggtgtactaagtgagctagctaagcttaaagagtctgctagtttggca
agtcaacttgaggaggaaagtcaacatgggggaaaattcacatga

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