KEGG   Quercus lobata (valley oak): 115979777
Entry
115979777         CDS       T07350                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like isoform X1
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03030  DNA replication
qlo03410  Base excision repair
qlo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    115979777
   03410 Base excision repair
    115979777
   03420 Nucleotide excision repair
    115979777
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:qlo03032]
    115979777
   03400 DNA repair and recombination proteins [BR:qlo03400]
    115979777
Enzymes [BR:qlo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     115979777
DNA replication proteins [BR:qlo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    115979777
DNA repair and recombination proteins [BR:qlo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      115979777
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 115979777
NCBI-ProteinID: XP_030957699
UniProt: A0A7N2KME6
LinkDB
Position
1:complement(13224286..13253853)
AA seq 2206 aa
MNGEGRRRDRRDPRSSKKQKLIRTAGEELESKFGFDLFSEGDKRLGWLLTSSPSSWEDED
TQHVYSCVDLYFVSQDGSTFKSKYKFRPYFYAATKEKTEVDVEAYLRRRYESQIADIEII
EKEDLDLKNHLSGLHKPYLKLSFDTVQQLMNVKSDLLHVVQRNQEKFDAAEAYESIIAGK
REQRPQDFLDCIVDLREYDVPYHVRFAIDNDVRCGQWYDVSVSSTGLMLEKRTDLLQRAE
VHVCAFDIETTKLPLKFPDAEYDLIMMISYMVDGQGYLIINRECVGDDIEDLEYTPKPEF
EGYFKVTNVRNEVELLRQWFAHMREVKPGIYVTYNGDFFDWPFLESRAAYHGLKMSEEVG
FQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRF
AKEKPQMMASYSVSDAVSTYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMV
QAYQANVICPNKHQSDPEKFYNSHLLESETYIGGHVECLESGVFRSDIPTSFKLDPSAYE
QLINNLDRDLQYAIRVEGKMDLELVSNYDEVKNAIMEKLVRLQGEPIRDECPLIYHLDVA
AMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYHLKK
QIESEFVDGTGGQLPKSFLDLPKTEQQLRLKERLKKYSQKAYKRVLDKPVTELREAGICM
RENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAH
KCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARVLVEKIGKPLELDTDGIWCVL
PGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLTDPINKRYTTHSECSI
EFEVDGPYKAMIIPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAEL
FDKFLHGSTLEECYSAVASVANRWLDLLDNQGNDIADSELLDYISESSTMSKSLADYGEQ
KSCAVTTARRLADFLGDAMVKDKGLRCQYIVACEPKGTPVSERAVPVAIFETDAEIMKHY
VRRWCKISSDVGIRSIIDWSYYKQRLSSAIQKVITIPAAMQKVANPVPRVVHPDWLHKKV
REKEDKFRQRKLVDIFSSLNRDEFLKKNSDAAGANGVMNEEIVKDLEDFGNKSRKSVTGP
RPIVRCYEVNNRQNSVKTNDQVGCLQQQTDHRLPALSSENIDKNVDYRGWLELKKRKWKD
TLERRKRQRLSNSRTPRRGKGVLEVLGDVTNHKDTQGRSGVSSYFKRHEASLTRCHWQII
QLVPSSDGQFFAWVVLEGIMLKIPMTVPRVFYLNSKAPVTEEFLGRRVSKILPHGRRSFN
LYEVIIDEDQFRKYSKKLAALLADPEVEGIYETKVPLEFNAILQIGCVCKVDKTAKKRNI
QDAWSLSELHMKTTTECSYLEQSISFFYLYHSISEGRAIYIGYFPASRTISVVVVNPYQN
KDLSPSFLEKQFREACQALSVEPPPPRNGVIFKVDYVGYIKDAEKILQREINEYRHEHHG
PTIAVIECPNAQSMKSGIRALDDFPCVTIPSNARDSHYQVLGWQQVAAKIGMQRCAASSQ
WLNDRISLSRYAHVPVGNFELDWLVFTADLFFSRALRDQQQVLWISDDGVPDLGGINEED
TCFADEVHQPVLTYPGAYRKITVELKIHHLAVNALLKSNQVNEMEGGALLGYDQDMHSGA
PVQNEHVGFDEDTACAPAFRVLKQLIQRCLADAVTFGNVYADAILQHLYRWLCSPESKLH
DPALHRILHKVMQKVFALLLAEFRKLGATIIFANFSKVIIDTGKFDLSAAKAYCDSLLKT
LQKRDLFEWIELEPMNFWHSLLFMDQYNYGGIPAKADDIVPDESQVDIVSSWNIAEYLPK
KIQDHFVFIVSQFMYIPWSYAQKQAAIRASLQDGNLSTPSVTVAGAENFESHMTEYLKGQ
ISSYFTDKLLGIVRDTILHMKGMSKTENDQNISSGLPQFADKTHKGDAALEFIKHVCAVL
ALDQNVQHDVLVMRKNLLKFVRVREFAPEAEFHDPCPSFNLSNVICSYCNDCRELDLCRD
TALLAQEWRCAVPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCLRCNQVKAAHLAEQ
CACAGPFKCKEDLTEFRSKMQIFLKIAIHQKFQLLQECTSWILELR
NT seq 6621 nt   +upstreamnt  +downstreamnt
atgaacggcgaaggaaggaggcgggaccgccgtgacccgcggagctccaagaagcagaag
ctaatccgcacagccggggaagagctcgagtccaagttcggcttcgatctcttctccgaa
ggcgacaagcgcctcggatggttgctcacatcctctccctcatcttgggaggatgaagac
acccaacacgtctatagttgtgtcgatctttattttgtttcacaggatggttcgactttc
aagtcaaaatacaagttccgaccttatttctatgcagccactaaggaaaaaacagaagta
gatgttgaagcatatttgagacggcgctatgaaagccaaattgctgatattgaaatcatt
gagaaagaagaccttgatcttaaaaaccatttgtctggcttgcacaaaccttatttgaag
ctatcttttgacacggttcaacaattaatgaatgtgaagagtgacctattgcatgtcgtt
caaagaaaccaggaaaaatttgatgctgcagaagcatatgagtccattatagcagggaaa
agagaacaaaggcctcaagattttctagattgtattgttgatctccgcgagtatgatgtt
ccttatcatgttcgatttgccattgataatgatgtgcgatgtgggcaatggtatgacgtt
agtgtatccagtactggtcttatgctggaaaagaggacagatcttttgcaacgtgctgaa
gtgcatgtttgtgcgtttgatattgagactacaaagcttcctttgaaatttcctgatgct
gaatacgatttaataatgatgatctcgtacatggttgatggacaagggtacctgattatt
aacagagagtgtgttggagatgacatagaggacttagagtatactccaaaaccggaattt
gaagggtattttaaagtgacaaatgtgagaaatgaggtagagcttcttagacagtggttt
gcccatatgcgagaggtgaagcctggtatttatgtcacgtacaatggtgatttttttgac
tggccgttcctggaaagcagagcagcctatcatgggttaaaaatgagtgaggaggtagga
tttcagtgtgacaagaatcaaggggagtgtcgtgctaaatttgcttgccatctggattgc
tttgcttgggtcaaacgtgatagttatctccctcaaggaagccagggcctaaaggctgtt
actaaagcaaagttgggttatgatcccctggaggtgaatcctgaggatatggttcgcttt
gcaaaggaaaagcctcagatgatggcctcctattctgtttctgatgctgtttcaacttac
tacttgtacatgacgtatgttcatcccttcattttctctcttgctactattatacctatg
tcaccagatgaggttttacgcaaaggtagtgggaccctttgtgaaatgctgcttatggtt
caggcgtatcaggctaatgttatctgtcctaacaaacaccaatctgacccagagaagttt
tacaatagtcaccttcttgagagtgagacttatataggtggccatgtggaatgcctcgaa
agtggggtttttagatctgatattcctactagtttcaagcttgatccatctgcctatgag
caactgatcaacaaccttgaccgggatttgcaatatgctataagagtagagggtaagatg
gacttggaattggtgtccaattatgatgaagtgaagaatgctataatggaaaagcttgta
agactgcaaggcgaacctatacgcgatgaatgcccccttatttatcatcttgatgtagct
gcaatgtatccaaatattattttaacaaacagactccagccaccatcaatagttacagat
gaggtctgcactgcatgtgatttcaaccgtcccggaaaaacttgtctacgaaagcttgaa
tgggtttggcgtggagagacattcatggcaaagaagagtgactattatcatttgaagaag
caaattgagtctgagttcgttgatggtactggtggtcagttgccaaaatcttttcttgac
ctaccaaagacagagcaacaattgaggctaaaggagcgtctaaaaaagtacagtcagaag
gcatataaacgggtacttgataagccagtcactgaactccgagaagcagggatctgcatg
cgggaaaacccattttatgttgacactgttcgtagctttcgggacagaaggtatgaatac
aaaggacttaacaaggtttggaaagggaagttgtcagaagccaaggctagtggaaattct
ataaaaatccaggaagcacaagatatggtagtgctttatgattcattacaacttgcccat
aagtgtatacttaattccttctatggttacgtcatgcgaaagggtgcaagatggtactca
atggaaatggctggagtagttacttatacaggagcaaaaataattcagaatgctcgcgta
ttggttgaaaaaattggaaaaccacttgaattagatacagatggtatctggtgtgtgctt
cctggatcttttccagagaactttactttcaaaaccaaagacttgaagaagaagctgaca
atctcatatccatgtgttatgctcaatgttgatgtggccagaaacaatacaaatgatcaa
taccagacactaacagatccaatcaataaaagatatacaactcatagtgaatgctcgatt
gaatttgaagtcgatggaccatacaaggcaatgattattcctgcttctaaggaagaagga
atcttaattaagaagcgatatgctgtttttaatgatgatggaacccttgccgagcttaaa
ggttttgagatcaagcgtagaggtgagctgaagctcatcaaagttttccaggctgagctc
tttgataagttcctccatgggtccaccttggaggaatgctattcagctgtagcttctgtt
gcaaaccgctggctcgatcttcttgataatcaaggaaacgatatcgcagacagtgagctg
cttgactacatatctgagtcaagcacaatgagcaagtccttagctgactatggtgaacaa
aagtcatgtgcagtgacgactgcaagacgccttgctgattttcttggtgatgcaatggtt
aaagataaaggactccgctgccagtatatagttgcatgtgaacctaagggaacacctgta
agtgagcgtgctgttcctgttgcaatatttgaaactgatgccgaaataatgaagcattat
gtgcggagatggtgcaagatttcatcagatgtgggcattcgatccattattgactggtct
tattacaagcaaaggcttagttcagcaattcagaaagttattaccattcctgcagcaatg
caaaaggttgcgaatcccgtccctagggtagtacatcctgattggctgcataagaaggtt
cgtgagaaggaggacaagtttcgacaacgcaaattagttgatatcttcagctcgttgaac
agggatgaatttttgaaaaagaatagtgatgctgctggcgccaatggtgtgatgaatgaa
gaaattgttaaagacttggaggactttggaaacaaaagcagaaaatctgtaactggacct
agaccaattgttcgttgctatgaagttaataatagacaaaactctgtcaagacaaatgac
caagtaggctgcctgcaacaacaaactgatcataggctacctgccctttcttctgaaaat
attgacaaaaatgtagattatcgaggatggcttgaactgaagaaaagaaagtggaaagat
actctagagagaaggaagaggcaaagattgagcaattcaaggactccacgccgtggtaaa
ggtgttcttgaagtgctgggtgatgtgacaaatcataaagatactcagggcagatctggt
gtcagttcatattttaagaggcatgaagcatctctaacacgctgccactggcagattata
cagctagttccgagttcagatggccaattttttgcttgggttgttttagaaggaatcatg
cttaagattcccatgactgttcctagggtattttacctcaactcaaaagcacctgtaaca
gaagaatttctgggaaggcgcgtaagcaagattcttcctcatggaaggcgtagctttaac
ttgtatgaggttataattgatgaagatcaatttagaaaatatagcaaaaaacttgcagcc
ctccttgcagaccctgaagttgaggggatatatgaaacaaaggtgccattggagtttaat
gctatcctccagattggttgtgtctgtaaagtggacaaaacagctaagaaaagaaatatc
caggatgcctggagtctgagtgaactacacatgaagacaacaactgaatgctcttatctg
gagcaatccatctccttcttttacttgtatcacagcatctctgaaggacgagctatatat
attgggtattttcctgcatcaagaacaatatctgttgtggtggttaatccttatcaaaat
aaagatttgtcaccatcttttcttgaaaaacaattccgtgaagcttgccaagctctatct
gttgaaccacctcctcctagaaatggtgtaattttcaaggtggactatgttggatatatc
aaggatgctgaaaagattttgcaaagagaaataaatgagtacagacatgaacatcacgga
cctacaattgctgttattgaatgcccaaatgctcaatcaatgaagtcaggtatacgagct
ctagatgatttcccatgtgtgaccattccttccaatgctcgcgatagtcactatcaggtt
cttgggtggcagcaagtggctgcgaaaattggaatgcaacgttgtgctgcatcgtcccag
tggttgaatgacagaatctctctgtcaagatatgcccatgtaccagtggggaattttgaa
cttgattggcttgtatttacagcagatctcttcttttcaagagcactacgtgatcaacaa
caggtactttggatatctgatgatggtgttccagatctaggtggcattaatgaggaagat
acctgttttgctgatgaggtccatcaacctgttcttacataccctggtgcatatagaaaa
ataacagtggagctaaagattcatcacctggctgtaaatgctcttttgaaaagcaaccaa
gtgaatgaaatggaaggaggtgctttgctaggatatgaccaggacatgcattctggagca
cctgttcagaatgaacatgttggctttgatgaggatactgcatgtgcacctgcatttcgt
gtcctaaaacagttgatccaaaggtgccttgcagatgcagtcacgtttggaaatgtatat
gctgatgcaatattgcaacatctatatcgatggctctgcagccctgaatcaaaacttcat
gacccagctcttcaccgcatacttcacaaggtgatgcaaaaggtgtttgcattattgttg
gccgagtttcggaaattgggtgccacaattatttttgcaaacttctcaaaggttattata
gacacaggcaaatttgatctctctgctgccaaagcttactgtgatagcttgcttaaaact
ctgcaaaagagagacttgtttgagtggattgagcttgagccaatgaacttctggcattct
ttgcttttcatggatcagtataactatggtggaattccggccaaagctgatgatattgta
cctgatgaatctcaagtggatattgtgtcaagctggaatattgctgaatacttacccaag
aaaattcaggatcattttgtttttatcgtctctcagtttatgtatattccctggagttat
gcacaaaagcaagctgcaattagagcctctttgcaggatggcaacttgtctactccgtca
gtgactgttgcaggtgctgagaattttgagtcacatatgacagaatatctaaaagggcag
atcagctcttacttcacagacaaacttttgggtattgttcgtgataccattcttcatatg
aaggggatgagcaaaactgaaaatgaccaaaacatatcttctgggctcccacaatttgct
gataaaacccacaaaggggatgctgcgcttgagttcattaagcatgtctgtgctgttctg
gccctagaccaaaatgttcaacatgatgttctggtgatgagaaagaatcttttaaaattt
gtgcgtgtgagggagtttgctccagaagctgagtttcatgatccttgcccatccttcaat
ttatcaaatgtcatttgcagctactgcaatgactgcagagagctggacttatgccgtgac
acagctctactggctcaggagtggcgctgtgctgtgccacaatgtggccaaccttacgat
cgtgaggtcatggagaacgctcttcttcaaattgtacggcagagagaacgtctctaccac
ttgcaggacctggtgtgtcttaggtgcaatcaggtgaaggctgcacatttagctgagcaa
tgtgcttgtgcaggcccatttaagtgcaaggaagatttgactgaattccggagtaagatg
cagattttcttgaagatagctattcatcagaaatttcaacttctccaggagtgtacctca
tggattttagaacttcgatga

DBGET integrated database retrieval system